Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75610 | Canola | nucleus | 92.86 | 92.0 |
| CDY44057 | Canola | nucleus | 75.78 | 76.01 |
| CDY42715 | Canola | nucleus | 65.22 | 71.43 |
| AT4G37180.2 | Thale cress | nucleus | 78.26 | 69.42 |
| CDX69206 | Canola | nucleus | 30.75 | 63.46 |
| CDY72117 | Canola | nucleus | 35.71 | 62.84 |
| CDY40421 | Canola | nucleus | 31.68 | 62.58 |
| CDY22459 | Canola | nucleus | 69.57 | 55.04 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 42.86 | 35.75 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 37.27 | 35.4 |
| Solyc02g090400.2.1 | Tomato | nucleus | 40.68 | 35.31 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 36.02 | 34.73 |
| PGSC0003DMT400026096 | Potato | nucleus | 39.13 | 34.52 |
| KXG37487 | Sorghum | nucleus | 36.65 | 34.5 |
| KRH28514 | Soybean | nucleus | 36.65 | 34.5 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 35.09 | 33.83 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 35.09 | 33.83 |
| Zm00001d034160_P001 | Maize | nucleus | 35.4 | 33.73 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 38.51 | 32.72 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 39.75 | 32.65 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 32.61 | 32.61 |
| CDY51048 | Canola | nucleus | 30.43 | 32.56 |
| KRH76947 | Soybean | nucleus | 36.96 | 32.43 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 36.65 | 31.72 |
| CDY59732 | Canola | nucleus | 25.16 | 31.64 |
| Os03t0764600-01 | Rice | nucleus | 34.16 | 31.61 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 33.23 | 31.01 |
| GSMUA_Achr10P... | Banana | nucleus | 37.58 | 30.95 |
| Zm00001d013202_P001 | Maize | nucleus | 34.78 | 30.94 |
| CDY20522 | Canola | nucleus | 31.68 | 30.91 |
| Os07t0119300-01 | Rice | nucleus | 33.85 | 30.7 |
| GSMUA_Achr10P... | Banana | nucleus | 36.96 | 30.67 |
| CDY51129 | Canola | nucleus | 30.12 | 30.31 |
| KRH04674 | Soybean | nucleus | 34.16 | 30.14 |
| CDY71327 | Canola | nucleus | 30.75 | 29.64 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 34.47 | 29.6 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 32.61 | 29.58 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 31.06 | 29.41 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 34.47 | 29.37 |
| Zm00001d018698_P001 | Maize | nucleus | 33.54 | 29.27 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 33.23 | 29.23 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 34.16 | 29.18 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 34.16 | 29.1 |
| TraesCS5D01G411800.1 | Wheat | plastid | 35.4 | 28.93 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 31.99 | 28.93 |
| CDY16075 | Canola | nucleus | 30.43 | 28.08 |
| CDX95998 | Canola | nucleus | 31.06 | 27.86 |
| Os03t0241001-00 | Rice | plastid | 12.42 | 27.78 |
| EER95793 | Sorghum | nucleus | 33.85 | 27.74 |
| CDX81535 | Canola | nucleus | 29.5 | 27.7 |
| CDX97993 | Canola | nucleus | 29.5 | 27.54 |
| CDY04180 | Canola | nucleus | 28.57 | 27.3 |
| CDY50179 | Canola | nucleus | 29.19 | 27.17 |
| CDY38609 | Canola | nucleus | 30.43 | 27.15 |
| CDX83554 | Canola | nucleus | 29.81 | 27.12 |
| Os12t0586300-00 | Rice | extracellular | 33.23 | 27.09 |
| CDY19382 | Canola | nucleus | 28.57 | 27.06 |
| CDY39188 | Canola | nucleus | 29.19 | 27.01 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 31.68 | 26.91 |
| CDY54503 | Canola | nucleus | 30.75 | 26.9 |
| CDY13584 | Canola | nucleus | 29.81 | 26.89 |
| CDY21091 | Canola | nucleus | 28.88 | 26.88 |
| HORVU2Hr1G006350.1 | Barley | plastid | 11.18 | 26.87 |
| Zm00001d030891_P001 | Maize | nucleus | 30.43 | 26.78 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 32.61 | 26.12 |
| HORVU6Hr1G034270.1 | Barley | plastid | 10.87 | 26.12 |
| CDY70722 | Canola | nucleus | 24.84 | 26.06 |
| CDY02988 | Canola | nucleus | 34.16 | 26.0 |
| CDY51214 | Canola | nucleus | 34.16 | 26.0 |
| OQU79454 | Sorghum | nucleus | 31.06 | 24.57 |
| HORVU2Hr1G062670.3 | Barley | plastid | 31.99 | 23.79 |
| CDY71874 | Canola | nucleus | 26.4 | 23.55 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 29.81 | 21.05 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 12.11 | 19.31 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 2.48 | 12.7 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078BZ60 | EnsemblPlants:CDX69259 | ProteinID:CDX69259 | ProteinID:CDX69259.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00131074001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF2 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE5886 | SEG:seg |
Description
BnaC01g01940D
Coordinates
chrLK031789:-:3767425..3768938
Molecular Weight (calculated)
36301.9 Da
IEP (calculated)
7.037
GRAVY (calculated)
-0.788
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQTGTDKMG LNLNLSMYSL AKPLSQFLDE VSRIKDYDSK LSEIDGYVGK LEEERKKIDV FKRELPLCML LLNEAIETLK EEASSSVVMA SDGKLDVGEG
101: AKVESDNKKN WMSSAQLWIS NPNSQLQSTN EKEDRSVTHK PIQGGAFTSF NLPPAPLSLR TPTSEILMDY NHQFSKPMQS LHSQKKEQRR RWSQELHRKF
201: VDALHSLGGS QVATPKQIRD MMKVDGLTND EVKSHLQKYR MHIRKHPAKT LSSSDQPVVL DKETQSLISL TRSDSPQSPL IDGGLFSNNG HSSEEAEDEE
301: KSDGRSWRSV SNKKKQGLDL EL
101: AKVESDNKKN WMSSAQLWIS NPNSQLQSTN EKEDRSVTHK PIQGGAFTSF NLPPAPLSLR TPTSEILMDY NHQFSKPMQS LHSQKKEQRR RWSQELHRKF
201: VDALHSLGGS QVATPKQIRD MMKVDGLTND EVKSHLQKYR MHIRKHPAKT LSSSDQPVVL DKETQSLISL TRSDSPQSPL IDGGLFSNNG HSSEEAEDEE
301: KSDGRSWRSV SNKKKQGLDL EL
001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
Arabidopsis Description
HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.