Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G401600.1 | Wheat | nucleus | 95.81 | 95.81 |
| TraesCS5D01G411800.1 | Wheat | plastid | 96.41 | 81.73 |
| KXG37487 | Sorghum | nucleus | 62.87 | 61.4 |
| Os03t0764600-01 | Rice | nucleus | 63.47 | 60.92 |
| Zm00001d034160_P001 | Maize | nucleus | 61.08 | 60.35 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 81.14 | 59.43 |
| Zm00001d013202_P001 | Maize | nucleus | 60.78 | 56.08 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 56.29 | 46.77 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 42.81 | 37.73 |
| GSMUA_Achr10P... | Banana | nucleus | 42.81 | 36.86 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 43.11 | 36.73 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 35.03 | 36.34 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 35.93 | 35.93 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 36.23 | 35.69 |
| GSMUA_Achr10P... | Banana | nucleus | 41.62 | 35.55 |
| CDX69259 | Canola | nucleus | 33.83 | 35.09 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 39.82 | 35.09 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 35.63 | 35.0 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 38.32 | 34.97 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 38.92 | 34.95 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 38.92 | 34.48 |
| Bra018794.1-P | Field mustard | nucleus | 31.14 | 34.44 |
| Bra010581.1-P | Field mustard | nucleus | 32.04 | 34.29 |
| CDY51048 | Canola | nucleus | 30.84 | 34.22 |
| Bra011720.1-P | Field mustard | nucleus | 32.93 | 33.85 |
| CDX75610 | Canola | nucleus | 32.93 | 33.85 |
| CDY44057 | Canola | nucleus | 32.34 | 33.64 |
| KRG89233 | Soybean | nucleus | 36.83 | 33.42 |
| Bra040662.1-P | Field mustard | nucleus | 32.34 | 33.13 |
| CDY42715 | Canola | nucleus | 29.04 | 32.99 |
| Bra017795.1-P | Field mustard | nucleus | 29.04 | 32.99 |
| CDY59732 | Canola | nucleus | 25.15 | 32.81 |
| CDY71327 | Canola | nucleus | 32.63 | 32.63 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 38.92 | 32.42 |
| KRH28514 | Soybean | nucleus | 32.93 | 32.16 |
| AT1G49560.1 | Thale cress | nucleus | 32.04 | 32.13 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 37.13 | 32.12 |
| CDY40421 | Canola | nucleus | 15.57 | 31.9 |
| KRH49770 | Soybean | nucleus | 35.03 | 31.88 |
| AT4G37180.2 | Thale cress | nucleus | 33.53 | 30.85 |
| PGSC0003DMT400066352 | Potato | nucleus | 37.13 | 30.85 |
| Solyc02g090400.2.1 | Tomato | nucleus | 34.13 | 30.73 |
| PGSC0003DMT400026096 | Potato | nucleus | 33.53 | 30.68 |
| Solyc01g108300.2.1 | Tomato | nucleus | 37.13 | 30.62 |
| CDY72117 | Canola | nucleus | 16.77 | 30.6 |
| KRH50234 | Soybean | nucleus | 37.13 | 30.1 |
| KRH76947 | Soybean | nucleus | 32.63 | 29.7 |
| KRH71185 | Soybean | nucleus | 36.53 | 29.47 |
| KRH04674 | Soybean | nucleus | 31.14 | 28.49 |
| CDX69206 | Canola | nucleus | 12.57 | 26.92 |
| CDY22459 | Canola | nucleus | 31.14 | 25.55 |
| TraesCS3B01G144100.1 | Wheat | nucleus | 32.04 | 22.67 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 23.35 | 22.29 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 11.68 | 19.31 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G406300.2 | EnsemblPlantsGene:TraesCS5B01G406300 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | InterPro:SANT/Myb |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF6 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | MapMan:15.5.2.3 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:582425750..582427223
Molecular Weight (calculated)
36637.7 Da
IEP (calculated)
8.637
GRAVY (calculated)
-0.534
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLDVGEIGM PLDLGLDLKL FVAKTAGRLA KEAPAVDACI RGLEEERRKI EVFRRELPLC ARLLADVIEF MKEEAAKRSE RRDADDNDKR KWMSTAQLWV
101: DTRATDAADP VKEQKKESSL SKPMLLGGAI GAPMAVSCRA MPPPAAPQYF GRDDKIVGSQ GLLALPMISP AANRQFSPPA DDRHQAFAAK FAAPMPPPGP
201: GLQTHDQQSR KTRRCWSPEL HRHFVAALHQ LGGPQVATPK QIREVMKVDG LTNDEVKSHL QKYRLHNQRS PSSSSASHPI MLVGDLWAHQ EQSSSQSRSP
301: EGPLQLSVSG VAVSALTVSD SSEEDDRSVG YSRR
101: DTRATDAADP VKEQKKESSL SKPMLLGGAI GAPMAVSCRA MPPPAAPQYF GRDDKIVGSQ GLLALPMISP AANRQFSPPA DDRHQAFAAK FAAPMPPPGP
201: GLQTHDQQSR KTRRCWSPEL HRHFVAALHQ LGGPQVATPK QIREVMKVDG LTNDEVKSHL QKYRLHNQRS PSSSSASHPI MLVGDLWAHQ EQSSSQSRSP
301: EGPLQLSVSG VAVSALTVSD SSEEDDRSVG YSRR
001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL
Arabidopsis Description
HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.