Factsheet for Zm00001d034160_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37487	Sorghum	nucleus	89.64	88.6
Zm00001d013202_P001	Maize	nucleus	80.77	75.41
Os03t0764600-01	Rice	nucleus	64.2	62.36
TraesCS5A01G401600.1	Wheat	nucleus	60.35	61.08
TraesCS5B01G406300.2	Wheat	nucleus	60.35	61.08
TraesCS5D01G411800.1	Wheat	plastid	60.65	52.03
Zm00001d007962_P001	Maize	extracellular, nucleus	52.37	51.3
Zm00001d018698_P001	Maize	nucleus	52.37	47.97
GSMUA_Achr6P34680_001	Banana	nucleus	47.63	42.48
GSMUA_Achr10P...	Banana	nucleus	46.15	40.21
GSMUA_Achr7P00660_001	Banana	nucleus	39.94	39.82
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	39.35	39.82
GSMUA_Achr4P23210_001	Banana	nucleus	42.6	38.71
Zm00001d030891_P001	Maize	nucleus	41.72	38.52
GSMUA_Achr10P...	Banana	nucleus	44.08	38.11
GSMUA_Achr9P26570_001	Banana	nucleus	44.08	38.01
GSMUA_Achr2P13380_001	Banana	nucleus	41.12	37.98
GSMUA_Achr4P28210_001	Banana	nucleus	36.09	37.89
HORVU5Hr1G097560.4	Barley	nucleus, plastid	50.59	37.5
GSMUA_Achr4P32500_001	Banana	nucleus	37.28	37.06
CDX69259	Canola	nucleus	33.73	35.4
CDX75610	Canola	nucleus	34.02	35.38
Bra011720.1-P	Field mustard	nucleus	33.73	35.08
CDY40421	Canola	nucleus	16.86	34.97
CDY51048	Canola	nucleus	31.07	34.88
Bra018794.1-P	Field mustard	nucleus	31.07	34.77
CDY59732	Canola	nucleus	26.33	34.77
CDY42715	Canola	nucleus	30.18	34.69
Bra017795.1-P	Field mustard	nucleus	30.18	34.69
GSMUA_Achr6P00650_001	Banana	nucleus	38.76	34.56
VIT_03s0063g01060.t01	Wine grape	nucleus	40.83	34.41
Bra040662.1-P	Field mustard	nucleus	33.14	34.36
Bra010581.1-P	Field mustard	nucleus	31.66	34.29
CDY44057	Canola	nucleus	32.54	34.27
VIT_07s0197g00060.t01	Wine grape	nucleus	37.87	33.16
KRH28514	Soybean	nucleus	33.43	33.04
PGSC0003DMT400066352	Potato	nucleus	39.05	32.84
CDY72117	Canola	nucleus	17.75	32.79
Solyc01g108300.2.1	Tomato	nucleus	39.05	32.59
KRG89233	Soybean	nucleus	35.21	32.34
CDY71327	Canola	nucleus	31.95	32.34
AT4G37180.2	Thale cress	nucleus	34.62	32.23
AT1G49560.1	Thale cress	nucleus	31.66	32.13
PGSC0003DMT400026096	Potato	nucleus	34.62	32.05
KRH50234	Soybean	nucleus	38.76	31.8
KRH71185	Soybean	nucleus	38.76	31.64
KRH49770	Soybean	nucleus	34.32	31.61
Solyc02g090400.2.1	Tomato	nucleus	34.32	31.27
KRH76947	Soybean	nucleus	33.43	30.79
CDX69206	Canola	nucleus	13.91	30.13
KRH04674	Soybean	nucleus	31.95	29.59
CDY22459	Canola	nucleus	30.47	25.31
CDY29342	Canola	cytosol, mitochondrion, nucleus	12.72	21.29
Zm00001d023411_P001	Maize	nucleus	28.4	21.19
Zm00001d023402_P001	Maize	nucleus	28.7	21.13
Zm00001d039637_P001	Maize	nucleus	32.84	20.71

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100282724	MapMan:15.5.2.3	UniProt:B6TAS1	ncoils:Coil	EMBL:EU962086
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	EMBL:KJ728055
InterPro:Myb_dom	InterPro:Myb_dom_plants	ProteinID:ONM09678.1	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003
PANTHER:PTHR31003:SF6	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000182C661	EnsemblPlantsGene:Zm00001d034160
EnsemblPlants:Zm00001d034160_P001	EnsemblPlants:Zm00001d034160_T001	SEG:seg	:	:	:

Description

G2-like-transcription factor 44DNA binding protein

Coordinates

chr1:+:285335178..285337132

Molecular Weight (calculated)

35806.4 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.453

Length

338 amino acids

Sequence
(BLAST)

001: MGLDVGGIGM GLDLGLDLGL FAARSAGGMA AAAKGAPAEI ESCIRSLEEE RRKIEVFRRE LPLCVRLLAD VIDELKDEAA KRGGDAEAKA DDGDKRKWMS
101: TAQLWLDSDA KSDESDKEQL SEITSPEPKL LGGAPMPIRA VAAVPPLPPP FFRREDSSAG SGLSLVPPAA KPPIPPMSAS DNASGRFCAT MPPSGSGANL
201: HSQAQQQARK ARRCWSPELH RLFVAALHQL GGPQVATPKQ IREVMKVDGL TNDEVKSHLQ KYRLHNRRSP GVVAPVSQSV MLAGGLWAPP HQEQSSSQSG
301: SPQGPLQFSG SGVAATVGGD SSSSDEDDKS EGYSRKYV

Best Arabidopsis Sequence Match ( AT4G37180.1 )
(BLAST)

001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL

Arabidopsis Description

HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.