Factsheet for Zm00001d007962_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 22192489

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018698_P001	Maize	nucleus	86.09	80.49
TraesCS2A01G264800.1	Wheat	nucleus	73.62	71.55
TraesCS2D01G259200.2	Wheat	nucleus	73.04	70.79
Os07t0119300-01	Rice	nucleus	68.99	67.04
TraesCS2B01G277300.1	Wheat	nucleus	72.17	61.94
HORVU2Hr1G062670.3	Barley	plastid	72.75	57.97
Zm00001d034160_P001	Maize	nucleus	51.3	52.37
Zm00001d013202_P001	Maize	nucleus	50.14	47.79
Zm00001d030891_P001	Maize	nucleus	40.58	38.25
GSMUA_Achr7P00660_001	Banana	nucleus	37.39	38.05
GSMUA_Achr10P...	Banana	nucleus	42.61	37.6
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	36.23	37.43
GSMUA_Achr10P...	Banana	nucleus	42.03	37.37
GSMUA_Achr9P26570_001	Banana	nucleus	42.32	37.24
GSMUA_Achr6P34680_001	Banana	nucleus	40.58	36.94
GSMUA_Achr4P32500_001	Banana	nucleus	36.23	36.76
GSMUA_Achr4P23210_001	Banana	nucleus	39.42	36.56
GSMUA_Achr4P28210_001	Banana	nucleus	33.33	35.71
VIT_03s0063g01060.t01	Wine grape	nucleus	41.16	35.41
KRH28514	Soybean	nucleus	34.78	35.09
GSMUA_Achr2P13380_001	Banana	nucleus	37.1	34.97
KRG89233	Soybean	nucleus	37.1	34.78
CDY51048	Canola	nucleus	30.14	34.55
Bra018794.1-P	Field mustard	nucleus	30.14	34.44
GSMUA_Achr6P00650_001	Banana	nucleus	37.1	33.77
CDY40421	Canola	nucleus	15.94	33.74
CDY42715	Canola	nucleus	28.7	33.67
Bra017795.1-P	Field mustard	nucleus	28.7	33.67
Bra010581.1-P	Field mustard	nucleus	30.43	33.65
CDY59732	Canola	nucleus	24.93	33.59
KRH49770	Soybean	nucleus	35.65	33.52
KRH50234	Soybean	nucleus	40.0	33.5
CDY44057	Canola	nucleus	31.01	33.33
CDX75610	Canola	nucleus	31.3	33.23
CDX69259	Canola	nucleus	31.01	33.23
KRH71185	Soybean	nucleus	39.71	33.09
KRH76947	Soybean	nucleus	35.07	32.97
VIT_07s0197g00060.t01	Wine grape	nucleus	36.81	32.9
CDY72117	Canola	nucleus	17.39	32.79
Bra011720.1-P	Field mustard	nucleus	30.72	32.62
Solyc01g108300.2.1	Tomato	nucleus	38.26	32.59
PGSC0003DMT400066352	Potato	nucleus	37.97	32.59
Solyc02g090400.2.1	Tomato	nucleus	34.78	32.34
PGSC0003DMT400026096	Potato	nucleus	34.2	32.33
CDY71327	Canola	nucleus	31.01	32.04
Bra040662.1-P	Field mustard	nucleus	30.14	31.9
KRH04674	Soybean	nucleus	32.46	30.68
AT1G49560.1	Thale cress	nucleus	29.28	30.33
AT4G37180.2	Thale cress	nucleus	31.01	29.48
CDX69206	Canola	nucleus	12.75	28.21
CDY22459	Canola	nucleus	28.99	24.57
Zm00001d023411_P001	Maize	nucleus	30.14	22.96
Zm00001d039637_P001	Maize	nucleus	35.07	22.57
Zm00001d023402_P001	Maize	nucleus	29.86	22.44
CDY29342	Canola	cytosol, mitochondrion, nucleus	12.17	20.79

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100283628	MapMan:15.5.2.3	UniProt:B6TK28	ncoils:Coil	EMBL:EU965343
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
InterPro:Myb_dom_plants	ProteinID:ONM28073.1	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF15
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000182E576	EnsemblPlantsGene:Zm00001d007962	EnsemblPlants:Zm00001d007962_P001
EnsemblPlants:Zm00001d007962_T001	SEG:seg	:	:	:	:

Description

G2-like-transcription factor 27Myb-like DNA-binding domain%2C SHAQKYF class family protein

Coordinates

chr2:-:244254163..244256107

Molecular Weight (calculated)

36737.5 Da

IEP (calculated)

7.470

GRAVY (calculated)

-0.416

Length

345 amino acids

Sequence
(BLAST)

001: MGLDVVEIGM GADLSLDLRH FASKAVRQSK DYAPAPAPDM DACIRRLEEE RGKIEMFKRE LPLCARLLAD VIDVMKEEAG KAVAEEDGAA GDKSKWMSTA
101: QLWTGDCGRE DAEPEKQDKE RSSPEARSRA AGGAFLPLKA AVGSGAPAFA PLGLRMDDKA AARAGMPDLC LLSPPATKSA AEESRRQVVG FAQAATRAAA
201: ATAPAAPSLS VGVQSPSQQA RKARRCWSTE LHRQFVAALN QLGGPQVATP KQIRELMKVD GLTNDEVKSH LQKYRLHNRR APGSGVVSQP IVLVGGLWIP
301: QEQSSSQSGS PHGPLHFSTS GIAVSSAATV SCEEEDGRSE SYGWK

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.