Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 58.05 | 65.87 |
| GSMUA_Achr10P... | Banana | nucleus | 66.75 | 64.71 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 65.44 | 63.27 |
| GSMUA_Achr10P... | Banana | nucleus | 63.85 | 62.37 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 51.98 | 58.11 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 55.67 | 56.72 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 46.44 | 54.66 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 52.51 | 54.37 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 49.6 | 49.6 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 42.74 | 47.65 |
| Zm00001d034160_P001 | Maize | nucleus | 42.48 | 47.63 |
| KXG37487 | Sorghum | nucleus | 41.95 | 46.49 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 38.26 | 43.41 |
| Os03t0764600-01 | Rice | nucleus | 39.58 | 43.1 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 37.73 | 42.81 |
| TraesCS2D01G259200.2 | Wheat | nucleus | 39.84 | 42.42 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 39.58 | 42.25 |
| TraesCS5D01G081000.1 | Wheat | nucleus | 41.42 | 41.87 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 41.69 | 41.8 |
| HORVU2Hr1G006350.1 | Barley | plastid | 14.78 | 41.79 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 41.16 | 41.38 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 41.16 | 41.27 |
| Zm00001d030891_P001 | Maize | nucleus | 39.58 | 40.98 |
| Zm00001d013202_P001 | Maize | nucleus | 39.05 | 40.88 |
| Os12t0586300-00 | Rice | extracellular | 42.48 | 40.76 |
| Zm00001d007962_P001 | Maize | extracellular, nucleus | 36.94 | 40.58 |
| HORVU6Hr1G034270.1 | Barley | plastid | 14.25 | 40.3 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 42.48 | 40.15 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 40.63 | 39.9 |
| CDY40421 | Canola | nucleus | 17.15 | 39.88 |
| Os07t0119300-01 | Rice | nucleus | 37.2 | 39.72 |
| Os03t0241001-00 | Rice | plastid | 15.04 | 39.58 |
| CDY51048 | Canola | nucleus | 31.13 | 39.2 |
| Bra018794.1-P | Field mustard | nucleus | 31.13 | 39.07 |
| Zm00001d018698_P001 | Maize | nucleus | 37.73 | 38.75 |
| CDX69259 | Canola | nucleus | 32.72 | 38.51 |
| KRG89233 | Soybean | nucleus | 37.2 | 38.32 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 40.63 | 38.31 |
| CDX75610 | Canola | nucleus | 32.45 | 37.85 |
| Bra010581.1-P | Field mustard | nucleus | 31.13 | 37.82 |
| CDY44057 | Canola | nucleus | 31.93 | 37.69 |
| KRH49770 | Soybean | nucleus | 36.41 | 37.6 |
| TraesCS5D01G411800.1 | Wheat | plastid | 39.05 | 37.56 |
| PGSC0003DMT400026096 | Potato | nucleus | 36.15 | 37.53 |
| OQU79454 | Sorghum | nucleus | 40.11 | 37.35 |
| Bra011720.1-P | Field mustard | nucleus | 31.93 | 37.23 |
| Bra040662.1-P | Field mustard | nucleus | 31.93 | 37.12 |
| CDY59732 | Canola | nucleus | 25.07 | 37.11 |
| CDY42715 | Canola | nucleus | 28.5 | 36.73 |
| Bra017795.1-P | Field mustard | nucleus | 28.5 | 36.73 |
| KRH71185 | Soybean | nucleus | 40.11 | 36.72 |
| Solyc02g090400.2.1 | Tomato | nucleus | 35.88 | 36.66 |
| KRH50234 | Soybean | nucleus | 39.58 | 36.41 |
| EER95793 | Sorghum | nucleus | 37.47 | 36.13 |
| CDY72117 | Canola | nucleus | 17.41 | 36.07 |
| KRH28514 | Soybean | nucleus | 32.45 | 35.96 |
| CDY71327 | Canola | nucleus | 31.66 | 35.93 |
| Solyc01g108300.2.1 | Tomato | nucleus | 38.26 | 35.8 |
| PGSC0003DMT400066352 | Potato | nucleus | 37.73 | 35.57 |
| AT1G49560.1 | Thale cress | nucleus | 30.87 | 35.14 |
| HORVU2Hr1G062670.3 | Barley | plastid | 39.84 | 34.87 |
| KRH04674 | Soybean | nucleus | 32.72 | 33.97 |
| KRH76947 | Soybean | nucleus | 32.45 | 33.52 |
| AT4G37180.2 | Thale cress | nucleus | 31.93 | 33.33 |
| CDX69206 | Canola | nucleus | 13.72 | 33.33 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 29.29 | 32.65 |
| GSMUA_Achr10P... | Banana | nucleus | 26.39 | 32.26 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 22.43 | 32.08 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.93 | 29.7 |
| GSMUA_Achr6P05330_001 | Banana | nucleus | 32.72 | 29.38 |
| GSMUA_Achr10P... | Banana | nucleus | 30.87 | 29.32 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 28.5 | 29.11 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 23.22 | 28.57 |
| CDY22459 | Canola | nucleus | 30.34 | 28.26 |
| GSMUA_Achr11P... | Banana | nucleus | 26.91 | 27.64 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 27.18 | 27.61 |
| HORVU5Hr1G097560.4 | Barley | nucleus, plastid | 32.45 | 26.97 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 13.98 | 26.24 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 4.22 | 25.4 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_Achr6G34680_001 | EnsemblPlants:GSMUA_Achr6P34680_001 | EnsemblPlants:GSMUA_Achr6T34680_001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M0TCR1 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF7 |
| InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI000295E89A | SEG:seg | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G34680_001]
Coordinates
chr6:+:33181057..33182689
Molecular Weight (calculated)
41299.9 Da
IEP (calculated)
7.430
GRAVY (calculated)
-0.555
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSAAAEFGL DFKLCAMRTV GGFLKEAAAA VQSSDGGVAK LENSVRSLEE ERRKIEAFKR ELPLCMLLLT DVIEGLKKEL ERCRGDRFVH VFQELMPIRS
101: RCEEEGGAKL EVDCKDKKKW MSSAQLWSDY SSDDNRNDDD QSVADERDGG PDRQEEEENL CLESKSGADT FVPFKGMAAL VMSSKQVTPT AGLSDLSLRS
201: PAAGSASFPV SVVAGNHPGS GSVSKCVGRA PTSTAGAHLS LQLQQQRKAR RCWSPELHRR FVFALQQLGG AQVATPKQIR ELMKVDGLTN DEVKSHLQKY
301: RLHTRKMPNA SPPASRPVVV LGGLWVPPEN HTAPPQKSVS QSGSPQSPLQ LADARRAISP TAGDSCEEEG GKSECHNWR
101: RCEEEGGAKL EVDCKDKKKW MSSAQLWSDY SSDDNRNDDD QSVADERDGG PDRQEEEENL CLESKSGADT FVPFKGMAAL VMSSKQVTPT AGLSDLSLRS
201: PAAGSASFPV SVVAGNHPGS GSVSKCVGRA PTSTAGAHLS LQLQQQRKAR RCWSPELHRR FVFALQQLGG AQVATPKQIR ELMKVDGLTN DEVKSHLQKY
301: RLHTRKMPNA SPPASRPVVV LGGLWVPPEN HTAPPQKSVS QSGSPQSPLQ LADARRAISP TAGDSCEEEG GKSECHNWR
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
Arabidopsis Description
EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.