Factsheet for GSMUA_Achr6P09870_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr3P18200_001
GSMUA_Achr4P27190_001
GSMUA_Achr5P04520_001
GSMUA_Achr6P25560_001
GSMUA_Achr8P29370_001
GSMUA_Achr9P08680_001
GSMUA_Achr9P13230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT1G25550.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT1G68670.1	GSMUA_Achr8P29370_001	AT1G22630.1	21798944
AT1G68670.1	GSMUA_Achr3P18200_001	AT2G04630.1	21798944
AT1G68670.1	GSMUA_Achr4P27190_001	AT2G04630.1	21798944
AT1G68670.1	GSMUA_Achr5P04520_001	AT3G05530.1	21798944
AT1G68670.1	GSMUA_Achr9P13230_001	AT3G05530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P18270_001	Banana	nucleus	68.53	62.8
GSMUA_Achr3P21090_001	Banana	nucleus	62.65	57.1
GSMUA_Achr10P...	Banana	nucleus	52.06	57.1
GSMUA_Achr11P...	Banana	nucleus	54.41	50.14
VIT_01s0011g03110.t01	Wine grape	nucleus	51.47	49.16
PGSC0003DMT400002162	Potato	nucleus	47.94	43.35
AT1G25550.1	Thale cress	nucleus	43.82	43.31
Os02t0325600-01	Rice	nucleus	52.06	42.96
AT1G68670.1	Thale cress	nucleus	44.71	42.94
CDX81535	Canola	nucleus	42.06	41.69
TraesCS2B01G135600.1	Wheat	nucleus	42.35	41.14
Bra038360.1-P	Field mustard	nucleus	44.41	41.03
Solyc05g009720.2.1	Tomato	nucleus	48.24	41.0
CDY54503	Canola	nucleus	44.12	40.76
CDY38609	Canola	nucleus	42.94	40.44
CDX95998	Canola	nucleus	42.65	40.39
Bra004330.1-P	Field mustard	nucleus	42.35	40.11
TraesCS2D01G119100.1	Wheat	nucleus	47.35	40.05
CDY51129	Canola	nucleus	37.65	40.0
KRG92028	Soybean	nucleus	43.82	39.11
CDY20522	Canola	nucleus	37.94	39.09
KRH75476	Soybean	nucleus	42.94	38.52
KRH34759	Soybean	nucleus	43.24	38.38
KRH70595	Soybean	nucleus	41.76	38.27
Zm00001d023411_P001	Maize	nucleus	50.59	37.97
EES15678	Sorghum	nucleus	51.47	37.88
GSMUA_Achr1P23220_001	Banana	nucleus	29.41	37.74
CDX83554	Canola	nucleus	38.82	37.29
Zm00001d023402_P001	Maize	nucleus	50.0	37.04
AT1G13300.1	Thale cress	nucleus	37.35	36.92
Bra012471.1-P	Field mustard	nucleus	35.29	36.47
CDY19382	Canola	nucleus	36.47	36.47
CDY13584	Canola	nucleus	37.35	35.57
CDY50179	Canola	nucleus	36.18	35.55
CDY16075	Canola	nucleus	36.47	35.53
Bra025161.1-P	Field mustard	nucleus	39.41	35.45
CDY04180	Canola	nucleus	35.0	35.31
CDY21091	Canola	nucleus	35.88	35.26
Bra016734.1-P	Field mustard	nucleus	35.88	35.26
CDX97993	Canola	nucleus	35.59	35.07
GSMUA_Achr4P03680_001	Banana	nucleus	31.76	35.06
AT3G25790.1	Thale cress	nucleus	36.76	35.01
TraesCS2A01G116100.2	Wheat	plastid	47.94	34.32
CDY39188	Canola	nucleus	35.0	34.2
Bra019824.1-P	Field mustard	nucleus	36.47	33.97
Bra017349.1-P	Field mustard	nucleus	35.29	33.52
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	31.76	32.34
GSMUA_Achr7P00660_001	Banana	nucleus	32.06	32.15
HORVU2Hr1G020140.3	Barley	nucleus, plastid	48.82	32.11
GSMUA_Achr4P28210_001	Banana	nucleus	29.41	31.06
GSMUA_Achr6P05330_001	Banana	nucleus	36.47	29.38
GSMUA_Achr6P34680_001	Banana	nucleus	32.65	29.29
GSMUA_Achr10P...	Banana	nucleus	33.24	29.12
GSMUA_Achr10P...	Banana	nucleus	33.24	28.9
GSMUA_Achr9P26570_001	Banana	nucleus	33.24	28.83
GSMUA_Achr4P32500_001	Banana	nucleus	28.82	28.82
GSMUA_Achr4P23210_001	Banana	nucleus	31.47	28.76
GSMUA_Achr10P...	Banana	nucleus	33.24	28.32
GSMUA_Achr2P13380_001	Banana	nucleus	29.71	27.6
GSMUA_Achr6P00650_001	Banana	nucleus	30.29	27.18
GSMUA_Achr4P13650_001	Banana	plastid	12.94	26.67

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSMUA_Achr6G09870_001	EnsemblPlants:GSMUA_Achr6P09870_001	EnsemblPlants:GSMUA_Achr6T09870_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0T5N6
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF16
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000296A728	SEG:seg	:

Description

MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G09870_001]

Coordinates

chr6:+:6619283..6621770

Molecular Weight (calculated)

37016.6 Da

IEP (calculated)

8.303

GRAVY (calculated)

-0.749

Length

340 amino acids

Sequence
(BLAST)

001: MVDHSGREQR CHDCIRALEE ERRKIEAFQR ELPLCLQLVT RAIECVREQM GDDESVNDAP VLEEFIPLKP SLASTSSEGS GEAKKAAMVG RLETKPDWLR
101: SVQLWDQQPD TVLKVEPPKK PMAVSLKKTG GAFQPFEREK HATTPPAATA AASNFTTSRG GGDSSRGGEM EKKEEQSPVH RKARRCWSPE LHRLFLHALE
201: RLGGSHVATP KQIREMMEVD GLTNDEVKSH LQKYRLHTRR PNPADQSSSS RPQFVLVGGL VVPPASPPGG NGACAPPNGI YAPVASRPSG LRSQQRPRSG
301: IRPSNSGGRC SEDVNSMGDD DSASPTTSAS SQTTTASPPF

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.