CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91449
KRG91803
KRH11677
KRH34983
KRH34984
KRH35367
KRH36679
KRH44917

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	KRG91803	AT1G35670.1	19130088
AT1G25550.1	KRH34983	AT1G35670.1	19130088
AT1G25550.1	KRH34984	AT1G35670.1	19130088
AT1G68670.1	KRH44917	AT1G22630.1	21798944
AT1G68670.1	KRG91449	AT2G04630.1	21798944
AT1G68670.1	KRH35367	AT2G04630.1	21798944
AT1G68670.1	KRH11677	AT3G52155.1	21798944
AT1G68670.1	KRH36679	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70595	Soybean	nucleus	86.81	88.68
KRG92028	Soybean	nucleus	62.01	61.68
KRH34759	Soybean	nucleus	61.48	60.84
VIT_01s0011g03110.t01	Wine grape	nucleus	56.46	60.11
PGSC0003DMT400002162	Potato	nucleus	53.56	53.99
Solyc05g009720.2.1	Tomato	nucleus	53.3	50.5
AT1G68670.1	Thale cress	nucleus	45.38	48.59
AT1G25550.1	Thale cress	nucleus	44.06	48.55
CDY54503	Canola	nucleus	46.97	48.37
Bra038360.1-P	Field mustard	nucleus	46.7	48.1
CDX81535	Canola	nucleus	43.27	47.81
CDY38609	Canola	nucleus	44.85	47.09
CDX95998	Canola	nucleus	44.59	47.08
Bra004330.1-P	Field mustard	nucleus	44.59	47.08
CDY20522	Canola	nucleus	39.84	45.76
CDY51129	Canola	nucleus	38.26	45.31
GSMUA_Achr10P...	Banana	nucleus	35.88	43.87
Bra012471.1-P	Field mustard	nucleus	37.47	43.16
GSMUA_Achr6P09870_001	Banana	nucleus	38.52	42.94
GSMUA_Achr3P21090_001	Banana	nucleus	41.95	42.63
GSMUA_Achr8P18270_001	Banana	nucleus	40.9	41.78
GSMUA_Achr11P...	Banana	nucleus	38.52	39.57
Os02t0325600-01	Rice	nucleus	42.22	38.84
GSMUA_Achr1P23220_001	Banana	nucleus	26.39	37.74
TraesCS2D01G119100.1	Wheat	nucleus	39.05	36.82
TraesCS2B01G135600.1	Wheat	nucleus	32.45	35.14
EES15678	Sorghum	nucleus	40.9	33.55
Zm00001d023402_P001	Maize	nucleus	40.37	33.33
Zm00001d023411_P001	Maize	nucleus	39.58	33.11
GSMUA_Achr4P03680_001	Banana	nucleus	25.59	31.49
TraesCS2A01G116100.2	Wheat	plastid	38.26	30.53
KRG89233	Soybean	nucleus	27.97	28.8
HORVU2Hr1G020140.3	Barley	nucleus, plastid	39.05	28.63
GSMUA_Achr4P13650_001	Banana	plastid	12.14	27.88
KRH50234	Soybean	nucleus	30.08	27.67
KRH28514	Soybean	nucleus	24.8	27.49
KRH71185	Soybean	nucleus	29.82	27.29
KRH49770	Soybean	nucleus	26.12	26.98
KRH56661	Soybean	nucleus	32.19	26.87
KRH03776	Soybean	nucleus	31.66	26.55
KRH76947	Soybean	nucleus	25.59	26.43
KRH63037	Soybean	nucleus	31.93	26.19
KRH54846	Soybean	nucleus	32.19	26.12
KRH04674	Soybean	nucleus	24.27	25.21

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100819750	MapMan:15.5.2.3	EMBL:ACUP02000355	EnsemblPlantsGene:GLYMA_01G086700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1J6P8	InterPro:IPR017930	EnsemblPlants:KRH75476
ProteinID:KRH75476	ProteinID:KRH75476.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31003	PANTHER:PTHR31003:SF4	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0001FC8921
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:25842073..25844689

Molecular Weight (calculated)

41980.3 Da

IEP (calculated)

7.797

GRAVY (calculated)

-0.764

Length

379 amino acids

Sequence
(BLAST)

001: MQFAQKMQPL KMGFLQYIEA LEEERRKIQV FPKELPLSLE LVTQAIEACR QQLAGTVAEY NLNGQSECSE QTSTDGPVFE EFIPLKKRAS QDSVEEEDED
101: EEHFHKHKKT ATDKKKSDWL RSVQLWNPNP PPTKEDVVVP RKTDVVEVKR NGGAFQPFQR EEKSGDAKAS INNDASAIGK APSSPPVPAT SSTGPVRVEN
201: KKEEKGQAQR KQRRCWSQEL HKRFLHALQQ LGGADSATPK QIRELMKVDG LTNDEVKSHL QKFRLHTRRS PIIHNNASSQ AGPLFLVGNI FVQPPEYAAV
301: ATTSTASGEE LTTVTTTTAP TGIYAPVAAH PPAVTHTLPI MKQKEHSHSE ERPNHSVLSN SPASSSSTHT ITTSPPVPN

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.