Factsheet for Bra004330.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001152.1-P
Bra012818.1-P
Bra025617.1-P
Bra039431.1-P
Bra040214.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68670.1	Bra025617.1-P	AT2G04630.1	21798944
AT1G68670.1	Bra001152.1-P	AT3G05530.1	21798944
AT1G68670.1	Bra039431.1-P	AT3G05530.1	21798944
AT1G68670.1	Bra040214.1-P	AT3G05530.1	21798944
AT1G68670.1	Bra012818.1-P	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95998	Canola	nucleus	99.44	99.44
CDY38609	Canola	nucleus	94.99	94.46
Bra038360.1-P	Field mustard	nucleus	77.72	75.82
AT1G68670.1	Thale cress	nucleus	72.7	73.73
VIT_01s0011g03110.t01	Wine grape	nucleus	51.53	51.97
Bra012471.1-P	Field mustard	nucleus	46.24	50.46
PGSC0003DMT400002162	Potato	nucleus	50.14	47.87
KRH70595	Soybean	nucleus	47.08	45.55
Solyc05g009720.2.1	Tomato	nucleus	50.7	45.5
KRH75476	Soybean	nucleus	47.08	44.59
Bra016734.1-P	Field mustard	nucleus	42.62	44.22
Bra025161.1-P	Field mustard	nucleus	45.13	42.86
GSMUA_Achr10P...	Banana	nucleus	36.77	42.58
GSMUA_Achr6P09870_001	Banana	nucleus	40.11	42.35
Bra017349.1-P	Field mustard	nucleus	41.78	41.9
KRH34759	Soybean	nucleus	44.57	41.78
Bra019824.1-P	Field mustard	nucleus	42.34	41.64
KRG92028	Soybean	nucleus	44.01	41.47
GSMUA_Achr11P...	Banana	nucleus	41.78	40.65
GSMUA_Achr8P18270_001	Banana	nucleus	41.5	40.16
GSMUA_Achr3P21090_001	Banana	nucleus	41.5	39.95
GSMUA_Achr1P23220_001	Banana	nucleus	28.97	39.25
Os02t0325600-01	Rice	nucleus	42.06	36.65
GSMUA_Achr4P03680_001	Banana	nucleus	30.92	36.04
TraesCS2D01G119100.1	Wheat	nucleus	40.11	35.82
TraesCS2B01G135600.1	Wheat	nucleus	34.26	35.14
Zm00001d023411_P001	Maize	nucleus	40.67	32.23
EES15678	Sorghum	nucleus	41.23	32.03
Zm00001d023402_P001	Maize	nucleus	40.39	31.59
Bra010581.1-P	Field mustard	nucleus	27.02	31.09
Bra017795.1-P	Field mustard	nucleus	24.51	29.93
TraesCS2A01G116100.2	Wheat	plastid	39.55	29.89
Bra011720.1-P	Field mustard	nucleus	26.74	29.54
Bra040662.1-P	Field mustard	nucleus	26.18	28.83
Bra018794.1-P	Field mustard	nucleus	23.96	28.48
HORVU2Hr1G020140.3	Barley	nucleus, plastid	40.95	28.43
GSMUA_Achr4P13650_001	Banana	plastid	12.81	27.88
Bra025115.1-P	Field mustard	nucleus	30.64	26.0
Bra026548.1-P	Field mustard	nucleus	29.25	24.88

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra004330	EnsemblPlants:Bra004330.1	EnsemblPlants:Bra004330.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CJE6
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF4
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00025417B4	SEG:seg	:

Description

AT1G68670 (E=1e-087) | myb family transcription factor

Coordinates

chrA07:+:18024577..18025960

Molecular Weight (calculated)

39936.8 Da

IEP (calculated)

8.861

GRAVY (calculated)

-0.877

Length

359 amino acids

Sequence
(BLAST)

001: MMVQKMEVDH AHKMQRCHEY VEALKEEQKK IQVFQRELPL CLELVTQAIE ACKKELSVTS TTSEQYSEQT ASVCGGPVLE EFIPIKKSNN EENREHESPR
101: EVDKSDVDSK KSDWLRSAHL WNHHSQDPDM TVVVAKKARV VEVKPNSHNR GGFQPFQKEK KRVFSETDLH PAVKATTPAP ATTTCSTTEV GGADKAGEEQ
201: IQKQQLQTQT QRKQRRCWSP ELHRRFLHAL QQLGGSHAAT PKQIRDHMKV DGLTNDEVKS HLQKYRLHTR RPATAQGNGN SQQPQFVVVG GIWVPSPQDF
301: PPPSDVANKG DGVYAQATAQ APVAPQSPKR SVERSSGRCN SPAASSSTNT TTTSASPVS

Best Arabidopsis Sequence Match ( AT1G68670.1 )
(BLAST)

001: MMVEMDYAKK MQKCHEYVEA LEEEQKKIQV FQRELPLCLE LVTQAIEACR KELSGTTTTT SEQCSEQTTS VCGGPVFEEF IPIKKISSLC EEVQEEEEED
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS

Arabidopsis Description

HHO2Transcription factor HHO2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.