Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004330.1-P | Field mustard | nucleus | 99.44 | 99.44 |
| CDY38609 | Canola | nucleus | 95.54 | 95.01 |
| CDX81535 | Canola | nucleus | 72.98 | 76.38 |
| CDY54503 | Canola | nucleus | 78.27 | 76.36 |
| AT1G68670.1 | Thale cress | nucleus | 73.26 | 74.29 |
| CDY51129 | Canola | nucleus | 47.63 | 53.44 |
| CDY20522 | Canola | nucleus | 48.47 | 52.73 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 51.81 | 52.25 |
| PGSC0003DMT400002162 | Potato | nucleus | 50.42 | 48.14 |
| CDX83554 | Canola | nucleus | 45.13 | 45.76 |
| Solyc05g009720.2.1 | Tomato | nucleus | 50.97 | 45.75 |
| KRH70595 | Soybean | nucleus | 47.08 | 45.55 |
| CDY13584 | Canola | nucleus | 44.57 | 44.82 |
| CDY50179 | Canola | nucleus | 43.18 | 44.8 |
| CDY19382 | Canola | nucleus | 42.34 | 44.71 |
| KRH75476 | Soybean | nucleus | 47.08 | 44.59 |
| CDY04180 | Canola | nucleus | 41.78 | 44.51 |
| CDY21091 | Canola | nucleus | 42.9 | 44.51 |
| CDY16075 | Canola | nucleus | 42.62 | 43.84 |
| CDX97993 | Canola | nucleus | 42.06 | 43.77 |
| GSMUA_Achr10P... | Banana | nucleus | 37.05 | 42.9 |
| CDY39188 | Canola | nucleus | 41.5 | 42.82 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 40.39 | 42.65 |
| KRH34759 | Soybean | nucleus | 44.57 | 41.78 |
| KRG92028 | Soybean | nucleus | 44.01 | 41.47 |
| GSMUA_Achr11P... | Banana | nucleus | 42.34 | 41.19 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 41.78 | 40.43 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 41.23 | 39.68 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 28.69 | 38.87 |
| Os02t0325600-01 | Rice | nucleus | 42.34 | 36.89 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 40.39 | 36.07 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 30.64 | 35.71 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 34.54 | 35.43 |
| CDY59732 | Canola | nucleus | 24.51 | 34.38 |
| CDY40421 | Canola | nucleus | 15.6 | 34.36 |
| Zm00001d023411_P001 | Maize | nucleus | 40.95 | 32.45 |
| EES15678 | Sorghum | nucleus | 40.95 | 31.82 |
| Zm00001d023402_P001 | Maize | nucleus | 40.67 | 31.81 |
| CDY72117 | Canola | nucleus | 16.16 | 31.69 |
| CDY44057 | Canola | nucleus | 27.86 | 31.15 |
| CDX69259 | Canola | nucleus | 27.86 | 31.06 |
| CDY42715 | Canola | nucleus | 25.07 | 30.61 |
| CDX75610 | Canola | nucleus | 27.58 | 30.46 |
| TraesCS2A01G116100.2 | Wheat | plastid | 39.83 | 30.11 |
| CDY51048 | Canola | nucleus | 24.23 | 28.9 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 41.23 | 28.63 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.53 | 27.27 |
| CDY70722 | Canola | nucleus | 22.84 | 26.71 |
| CDY71327 | Canola | nucleus | 24.79 | 26.65 |
| CDY51214 | Canola | nucleus | 30.92 | 26.24 |
| CDY02988 | Canola | nucleus | 30.92 | 26.24 |
| CDY71874 | Canola | nucleus | 26.18 | 26.04 |
| CDX69206 | Canola | nucleus | 10.31 | 23.72 |
| CDY22459 | Canola | nucleus | 26.74 | 23.59 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 11.14 | 19.8 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078E9F1 | EnsemblPlants:CDX95998 | ProteinID:CDX95998 | ProteinID:CDX95998.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00102026001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF4 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE6EF8 |
| SEG:seg | : | : | : | : | : |
Description
BnaA07g27330D
Coordinates
chrLK031892:-:529742..531373
Molecular Weight (calculated)
39865.7 Da
IEP (calculated)
8.676
GRAVY (calculated)
-0.859
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MMVQKMEVDH AHKMQRCHEY VEALKEEQKK IQVFQRELPL CLELVTQAIE ACKKELSVTS TTSEQYSEQT ASVCGGPVLE EFIPIKKSNN EENGEHESPR
101: EVDKSDVDSK KSDWLRSAHL WNHHSQDPDM TVVVAKKARV VEVKPNSHNR GGFQPFQKEK KRVFSETDLH PAVKATTPAP ATTTCSTTEV GGADKAGEEQ
201: IQKQQLQTQT QRKQRRCWSP ELHRRFLHAL QQLGGSHVAT PKQIRDHMKV DGLTNDEVKS HLQKYRLHTR RPATAQGNGN SQQPQFVVVG GIWVPSPQDF
301: PPPSDVANKG DGVYAQATAQ APVAPQSPKR SVERSSGRCN SPAASSSTNT TTTSASPVS
101: EVDKSDVDSK KSDWLRSAHL WNHHSQDPDM TVVVAKKARV VEVKPNSHNR GGFQPFQKEK KRVFSETDLH PAVKATTPAP ATTTCSTTEV GGADKAGEEQ
201: IQKQQLQTQT QRKQRRCWSP ELHRRFLHAL QQLGGSHVAT PKQIRDHMKV DGLTNDEVKS HLQKYRLHTR RPATAQGNGN SQQPQFVVVG GIWVPSPQDF
301: PPPSDVANKG DGVYAQATAQ APVAPQSPKR SVERSSGRCN SPAASSSTNT TTTSASPVS
001: MMVEMDYAKK MQKCHEYVEA LEEEQKKIQV FQRELPLCLE LVTQAIEACR KELSGTTTTT SEQCSEQTTS VCGGPVFEEF IPIKKISSLC EEVQEEEEED
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS
Arabidopsis Description
HHO2Transcription factor HHO2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.