Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017349.1-P | Field mustard | nucleus | 99.7 | 93.85 |
| CDY39188 | Canola | nucleus | 92.28 | 89.37 |
| CDX83554 | Canola | nucleus | 78.93 | 75.14 |
| CDY13584 | Canola | nucleus | 76.56 | 72.27 |
| AT3G25790.1 | Thale cress | nucleus | 71.22 | 67.23 |
| CDX97993 | Canola | nucleus | 59.05 | 57.68 |
| CDY19382 | Canola | nucleus | 57.86 | 57.35 |
| CDY16075 | Canola | nucleus | 59.35 | 57.31 |
| CDY50179 | Canola | nucleus | 58.46 | 56.94 |
| CDY21091 | Canola | nucleus | 57.86 | 56.36 |
| CDY20522 | Canola | nucleus | 44.51 | 45.45 |
| CDY51129 | Canola | nucleus | 42.73 | 45.0 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 47.18 | 44.66 |
| CDX81535 | Canola | nucleus | 43.92 | 43.15 |
| CDY54503 | Canola | nucleus | 46.29 | 42.39 |
| PGSC0003DMT400002162 | Potato | nucleus | 46.88 | 42.02 |
| CDX95998 | Canola | nucleus | 44.51 | 41.78 |
| CDY38609 | Canola | nucleus | 43.62 | 40.72 |
| Solyc05g009720.2.1 | Tomato | nucleus | 47.77 | 40.25 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 28.78 | 36.6 |
| GSMUA_Achr10P... | Banana | nucleus | 32.94 | 35.81 |
| GSMUA_Achr11P... | Banana | nucleus | 39.17 | 35.77 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 35.31 | 35.0 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 37.69 | 34.23 |
| Os02t0325600-01 | Rice | nucleus | 41.84 | 34.22 |
| CDY59732 | Canola | nucleus | 25.52 | 33.59 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 39.47 | 33.08 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 35.31 | 31.9 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 29.08 | 31.82 |
| CDY40421 | Canola | nucleus | 14.84 | 30.67 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 31.45 | 30.29 |
| EES15678 | Sorghum | nucleus | 40.06 | 29.22 |
| CDX75610 | Canola | nucleus | 27.6 | 28.62 |
| CDX69259 | Canola | nucleus | 27.3 | 28.57 |
| CDY72117 | Canola | nucleus | 15.43 | 28.42 |
| CDY44057 | Canola | nucleus | 27.0 | 28.35 |
| CDY51048 | Canola | nucleus | 25.22 | 28.24 |
| CDY42715 | Canola | nucleus | 24.63 | 28.23 |
| Zm00001d023411_P001 | Maize | nucleus | 37.39 | 27.81 |
| TraesCS2A01G116100.2 | Wheat | plastid | 39.17 | 27.79 |
| Zm00001d023402_P001 | Maize | nucleus | 37.69 | 27.67 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 13.35 | 27.27 |
| CDY71327 | Canola | nucleus | 26.71 | 26.95 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 38.87 | 25.34 |
| CDY70722 | Canola | nucleus | 21.96 | 24.1 |
| CDY51214 | Canola | nucleus | 29.38 | 23.4 |
| CDY02988 | Canola | nucleus | 29.38 | 23.4 |
| CDY71874 | Canola | nucleus | 24.04 | 22.44 |
| CDY22459 | Canola | nucleus | 26.71 | 22.11 |
| CDX69206 | Canola | nucleus | 10.09 | 21.79 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 12.46 | 20.79 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078EQF2 | EnsemblPlants:CDY04180 | ProteinID:CDY04180 | ProteinID:CDY04180.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00117875001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF16 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE430E |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g19580D
Coordinates
chrLK031949:+:1022211..1024352
Molecular Weight (calculated)
38166.6 Da
IEP (calculated)
6.884
GRAVY (calculated)
-0.931
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MINSLSNMKN YNEKRVRCCE YIKALEEERR KINVFQRELP LCLELVTQAI ETYKKEISEA TMENLCGQSE CSEQTTGECG GILDLFRPIK HSSTSLEGEE
101: EEVDADDEHE SNETGLDCDD KNMKSEWLKS VQLWNQPDSV LSKKLERSQQ ETETVVEAIN GNDNGTTSHQ PPCYETSNGK SGDDKSQARR RKHRRCWSHE
201: LHRRFLNTLK QLGGPHVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PGQTIPNKRD SQTQHFVVVG GIWVPQASHS TANAATAGET TIGIYGPLQA
301: EWPSQSNFGR TISEERSRCS NKGIIRCSSP AMSSSTR
101: EEVDADDEHE SNETGLDCDD KNMKSEWLKS VQLWNQPDSV LSKKLERSQQ ETETVVEAIN GNDNGTTSHQ PPCYETSNGK SGDDKSQARR RKHRRCWSHE
201: LHRRFLNTLK QLGGPHVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PGQTIPNKRD SQTQHFVVVG GIWVPQASHS TANAATAGET TIGIYGPLQA
301: EWPSQSNFGR TISEERSRCS NKGIIRCSSP AMSSSTR
001: MIKNLSNMKN DNQKREKCCE YIEALEEERR KINVFQRELP LCVELVTQAI EAYKREISGT STDNLYGQSE CSEQTTGECG RILDLFIPIK HSSTSIEEEV
101: DDKDDDDEEH QSHETDIDFD DKNMKSEWLK SVQLWNQSDA VVSNNRQDRS QEKTETLVEL IKINDEAAKK NNNIKSPVTT SDGGSGGGGG RRGQRKNRRC
201: WSQELHRRFL NALKQLGGPH VATPKQIRDI MKVDGLTNDE VKSHLQKYRL HARRPSQTTP NNRNSQTQHF VVVGGIWVPQ TNHSTANAVN AVASGETTGI
301: YGPMVSSLPS EWPRHSNFGR KISEDRSRCS NNGFFRCSSP AMSCSTRTKT KDAKIIS
101: DDKDDDDEEH QSHETDIDFD DKNMKSEWLK SVQLWNQSDA VVSNNRQDRS QEKTETLVEL IKINDEAAKK NNNIKSPVTT SDGGSGGGGG RRGQRKNRRC
201: WSQELHRRFL NALKQLGGPH VATPKQIRDI MKVDGLTNDE VKSHLQKYRL HARRPSQTTP NNRNSQTQHF VVVGGIWVPQ TNHSTANAVN AVASGETTGI
301: YGPMVSSLPS EWPRHSNFGR KISEDRSRCS NNGFFRCSSP AMSCSTRTKT KDAKIIS
Arabidopsis Description
HHO1Transcription factor HHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS00]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.