Factsheet for Bra017349.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04180	Canola	nucleus	93.85	99.7
CDY39188	Canola	nucleus	92.74	95.4
Bra025161.1-P	Field mustard	nucleus	78.21	74.07
AT3G25790.1	Thale cress	nucleus	68.44	68.63
Bra016734.1-P	Field mustard	nucleus	56.7	58.67
Bra019824.1-P	Field mustard	nucleus	55.03	53.97
VIT_01s0011g03110.t01	Wine grape	nucleus	45.53	45.79
Bra012471.1-P	Field mustard	nucleus	39.94	43.47
PGSC0003DMT400002162	Potato	nucleus	44.97	42.82
Bra038360.1-P	Field mustard	nucleus	43.3	42.12
Bra004330.1-P	Field mustard	nucleus	41.9	41.78
Solyc05g009720.2.1	Tomato	nucleus	45.81	41.0
GSMUA_Achr11P...	Banana	nucleus	38.27	37.13
GSMUA_Achr1P23220_001	Banana	nucleus	27.09	36.6
GSMUA_Achr10P...	Banana	nucleus	31.56	36.45
GSMUA_Achr6P09870_001	Banana	nucleus	33.52	35.29
GSMUA_Achr8P18270_001	Banana	nucleus	36.31	35.04
Os02t0325600-01	Rice	nucleus	39.66	34.47
TraesCS2D01G119100.1	Wheat	nucleus	37.43	33.33
GSMUA_Achr3P21090_001	Banana	nucleus	34.64	33.24
GSMUA_Achr4P03680_001	Banana	nucleus	27.37	31.82
TraesCS2B01G135600.1	Wheat	nucleus	29.89	30.57
EES15678	Sorghum	nucleus	37.99	29.44
Bra010581.1-P	Field mustard	nucleus	25.42	29.17
Bra011720.1-P	Field mustard	nucleus	26.26	28.92
Bra017795.1-P	Field mustard	nucleus	23.46	28.57
Bra040662.1-P	Field mustard	nucleus	25.98	28.53
Bra018794.1-P	Field mustard	nucleus	24.02	28.48
Zm00001d023411_P001	Maize	nucleus	35.47	28.04
TraesCS2A01G116100.2	Wheat	plastid	37.15	28.0
Zm00001d023402_P001	Maize	nucleus	35.75	27.89
GSMUA_Achr4P13650_001	Banana	plastid	12.57	27.27
HORVU2Hr1G020140.3	Barley	nucleus, plastid	36.87	25.53
Bra025115.1-P	Field mustard	nucleus	27.65	23.4
Bra026548.1-P	Field mustard	nucleus	26.82	22.75

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra017349	EnsemblPlants:Bra017349.1	EnsemblPlants:Bra017349.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4DLG8
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF16
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00025421D4	SEG:seg	:

Description

AT3G25790 (E=2e-125) | myb family transcription factor

Coordinates

chrA09:-:14464242..14466382

Molecular Weight (calculated)

40156.9 Da

IEP (calculated)

6.728

GRAVY (calculated)

-0.905

Length

358 amino acids

Sequence
(BLAST)

001: MINSLSNMKN YNEKRVRCCE YIKALEEERR KINVFQRELP LCLELVTQAI ETYKKEISEA TMENLCGQSE CSEQTTGECG GILDLFRPIK HSSTSLEGEE
101: EEVDADDEHE SNETGLDCDD KNMKSEWLKS VQLWNQPDSV LSKKLERSQQ ETETVVEAIN GNDNGTTSHQ PPCYETSNGK SGDDKSQASI SGRQKMEAEK
201: DISGGSGGIG RRKHRRCWSH ELHRRFLNTL KQLGGPHVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPGQTIPNKR DSQTQHFVVV GGIWVPQASH
301: STANAATAGE TTIGIYGPLQ AEWPSQSNFG RTISEERSRC SNKGIIRCSS PAMSSSTR

Best Arabidopsis Sequence Match ( AT3G25790.1 )
(BLAST)

001: MIKNLSNMKN DNQKREKCCE YIEALEEERR KINVFQRELP LCVELVTQAI EAYKREISGT STDNLYGQSE CSEQTTGECG RILDLFIPIK HSSTSIEEEV
101: DDKDDDDEEH QSHETDIDFD DKNMKSEWLK SVQLWNQSDA VVSNNRQDRS QEKTETLVEL IKINDEAAKK NNNIKSPVTT SDGGSGGGGG RRGQRKNRRC
201: WSQELHRRFL NALKQLGGPH VATPKQIRDI MKVDGLTNDE VKSHLQKYRL HARRPSQTTP NNRNSQTQHF VVVGGIWVPQ TNHSTANAVN AVASGETTGI
301: YGPMVSSLPS EWPRHSNFGR KISEDRSRCS NNGFFRCSSP AMSCSTRTKT KDAKIIS

Arabidopsis Description

HHO1Transcription factor HHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS00]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.