Factsheet for TraesCS2A01G116100.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, vacuole
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G015100.1
TraesCS1B01G019300.1
TraesCS2B01G194500.1
TraesCS2D01G175800.1
TraesCS3A01G421900.1
TraesCS3B01G457100.1
TraesCS3D01G417000.1
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5A01G174800.1
TraesCS5B01G115400.1
TraesCS5B01G174000.1
TraesCS5D01G122800.1
TraesCS5D01G181000.1
TraesCS7B01G036400.1
TraesCS7D01G134800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	TraesCS4A01G206200.2	AT1G35670.1	19130088
AT1G25550.1	TraesCS4B01G109800.2	AT1G35670.1	19130088
AT1G25550.1	TraesCS4D01G107200.1	AT1G35670.1	19130088
AT1G25550.1	TraesCS5A01G107900.1	AT1G35670.1	19130088
AT1G25550.1	TraesCS5B01G115400.1	AT1G35670.1	19130088
AT1G25550.1	TraesCS5D01G122800.1	AT1G35670.1	19130088
AT1G68670.1	TraesCS1A01G015100.1	AT1G22630.1	21798944
AT1G68670.1	TraesCS1B01G019300.1	AT1G22630.1	21798944
AT1G68670.1	TraesCS2B01G194500.1	AT2G04630.1	21798944
AT1G68670.1	TraesCS2D01G175800.1	AT2G04630.1	21798944
AT1G68670.1	TraesCS3A01G421900.1	AT3G05530.1	21798944
AT1G68670.1	TraesCS3B01G457100.1	AT3G05530.1	21798944
AT1G68670.1	TraesCS3D01G417000.1	AT3G05530.1	21798944
AT1G68670.1	TraesCS7B01G036400.1	AT3G05530.1	21798944
AT1G68670.1	TraesCS7D01G134800.1	AT3G05530.1	21798944
AT1G68670.1	TraesCS5A01G174800.1	AT3G52155.1	21798944
AT1G68670.1	TraesCS5B01G174000.1	AT3G52155.1	21798944
AT1G68670.1	TraesCS5D01G181000.1	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G119100.1	Wheat	nucleus	77.89	92.04
TraesCS2B01G135600.1	Wheat	nucleus	67.79	92.0
HORVU2Hr1G020140.3	Barley	nucleus, plastid	82.95	76.21
Os02t0325600-01	Rice	nucleus	58.11	66.99
EES15678	Sorghum	nucleus	53.89	55.41
Zm00001d023411_P001	Maize	nucleus	52.0	54.53
Zm00001d023402_P001	Maize	nucleus	52.63	54.47
GSMUA_Achr11P...	Banana	nucleus	37.26	47.97
GSMUA_Achr6P09870_001	Banana	nucleus	34.32	47.94
GSMUA_Achr8P18270_001	Banana	nucleus	37.26	47.71
VIT_01s0011g03110.t01	Wine grape	nucleus	34.95	46.63
GSMUA_Achr3P21090_001	Banana	nucleus	36.42	46.38
GSMUA_Achr10P...	Banana	nucleus	29.68	45.48
PGSC0003DMT400002162	Potato	nucleus	35.16	44.41
AT1G25550.1	Thale cress	nucleus	30.53	42.15
CDY51129	Canola	nucleus	28.21	41.88
Solyc05g009720.2.1	Tomato	nucleus	34.95	41.5
CDY20522	Canola	nucleus	28.42	40.91
AT1G68670.1	Thale cress	nucleus	30.32	40.68
CDX81535	Canola	nucleus	28.84	39.94
CDX95998	Canola	nucleus	30.11	39.83
Bra004330.1-P	Field mustard	nucleus	29.89	39.55
CDY04180	Canola	nucleus	27.79	39.17
CDX83554	Canola	nucleus	29.05	38.98
CDY38609	Canola	nucleus	29.47	38.78
CDY13584	Canola	nucleus	29.05	38.66
KRG92028	Soybean	nucleus	30.95	38.58
KRH34759	Soybean	nucleus	30.95	38.38
CDY54503	Canola	nucleus	29.68	38.32
Bra012471.1-P	Field mustard	nucleus	26.53	38.3
KRH75476	Soybean	nucleus	30.53	38.26
AT1G13300.1	Thale cress	nucleus	27.58	38.08
Bra038360.1-P	Field mustard	nucleus	29.47	38.04
KRH70595	Soybean	nucleus	29.47	37.74
CDY39188	Canola	nucleus	27.58	37.64
Bra025161.1-P	Field mustard	nucleus	29.89	37.57
CDY16075	Canola	nucleus	27.58	37.54
Bra017349.1-P	Field mustard	nucleus	28.0	37.15
CDY50179	Canola	nucleus	26.74	36.71
CDY19382	Canola	nucleus	26.11	36.47
AT3G25790.1	Thale cress	nucleus	27.37	36.41
Bra016734.1-P	Field mustard	nucleus	26.32	36.13
CDY21091	Canola	nucleus	26.32	36.13
CDX97993	Canola	nucleus	25.68	35.36
Bra019824.1-P	Field mustard	nucleus	25.47	33.15
TraesCS5A01G401600.1	Wheat	nucleus	20.63	29.34
TraesCS2A01G264800.1	Wheat	nucleus	21.47	28.73
TraesCS3A01G123700.1	Wheat	nucleus	27.37	27.54
TraesCS5A01G068900.2	Wheat	nucleus	20.21	25.4

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0045892
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31003	PANTHER:PTHR31003:SF16	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	EnsemblPlantsGene:TraesCS2A01G116100
EnsemblPlants:TraesCS2A01G116100.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:66318037..66319863

Molecular Weight (calculated)

50995.6 Da

IEP (calculated)

6.652

GRAVY (calculated)

-0.621

Length

475 amino acids

Sequence
(BLAST)

001: MGIPSPNILP VPIHPSLRLP SPRTNIRDAP TTIPFLPSPS IFLTFPVPFP PSSLYLPGSF LADQSIHPTR AAEMEMDVPP AQADRDGARR RLRDYLLALE
101: EERRKIHVFQ RELPLCLDLV TQTIEGMKSQ MGGAASEETV SDHGGPVLEE FIPLKPSLSL SSSDDETSTH AAVAPVSNAK AETPPPTPET KKAMPDWLQC
201: AQLSSAWSEP QQSSSLQKVL PCRPVALNAT RTGGAFHPFE KEKQPEPELP ASSTTAPASS ALVGDSGDKA TSDTEVHDKD SKDATEKDTD KDKDKEGQSQ
301: PPNNRKPRRC WAPELHRRFL QALQQLGGSH VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTSRRPSSTA QSGGAPATQP TPQFFVVGSC IWVPQQEYAA
401: AAAAAAAAAE ATNVALGSAN QVYAPTATLP SGSKPHLEKQ SSRQSEGPRS GVNSDSDNPT MSSSSSSQAT SAGRP

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.