CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91449
KRG91803
KRH11677
KRH34983
KRH34984
KRH35367
KRH36679
KRH44917

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	KRG91803	AT1G35670.1	19130088
AT1G25550.1	KRH34983	AT1G35670.1	19130088
AT1G25550.1	KRH34984	AT1G35670.1	19130088
AT1G68670.1	KRH44917	AT1G22630.1	21798944
AT1G68670.1	KRG91449	AT2G04630.1	21798944
AT1G68670.1	KRH35367	AT2G04630.1	21798944
AT1G68670.1	KRH11677	AT3G52155.1	21798944
AT1G68670.1	KRH36679	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34759	Soybean	nucleus	90.03	89.56
KRH75476	Soybean	nucleus	61.68	62.01
KRH70595	Soybean	nucleus	60.1	61.73
VIT_01s0011g03110.t01	Wine grape	nucleus	55.64	59.55
PGSC0003DMT400002162	Potato	nucleus	52.76	53.46
Solyc05g009720.2.1	Tomato	nucleus	53.54	51.0
AT1G25550.1	Thale cress	nucleus	43.31	47.97
AT1G68670.1	Thale cress	nucleus	43.31	46.61
CDX81535	Canola	nucleus	41.47	46.06
CDY51129	Canola	nucleus	38.58	45.94
CDY54503	Canola	nucleus	43.83	45.38
CDY20522	Canola	nucleus	39.11	45.15
Bra038360.1-P	Field mustard	nucleus	43.57	45.11
CDY38609	Canola	nucleus	41.73	44.04
CDX95998	Canola	nucleus	41.47	44.01
Bra004330.1-P	Field mustard	nucleus	41.47	44.01
GSMUA_Achr6P09870_001	Banana	nucleus	39.11	43.82
GSMUA_Achr10P...	Banana	nucleus	35.43	43.55
Bra012471.1-P	Field mustard	nucleus	36.75	42.55
GSMUA_Achr3P21090_001	Banana	nucleus	41.47	42.36
GSMUA_Achr8P18270_001	Banana	nucleus	41.21	42.32
GSMUA_Achr11P...	Banana	nucleus	39.37	40.65
GSMUA_Achr1P23220_001	Banana	nucleus	26.51	38.11
Os02t0325600-01	Rice	nucleus	40.68	37.62
TraesCS2D01G119100.1	Wheat	nucleus	38.85	36.82
TraesCS2B01G135600.1	Wheat	nucleus	32.81	35.71
Zm00001d023411_P001	Maize	nucleus	40.94	34.44
Zm00001d023402_P001	Maize	nucleus	41.21	34.2
EES15678	Sorghum	nucleus	41.21	33.98
GSMUA_Achr4P03680_001	Banana	nucleus	25.46	31.49
TraesCS2A01G116100.2	Wheat	plastid	38.58	30.95
HORVU2Hr1G020140.3	Barley	nucleus, plastid	39.37	29.01
KRG89233	Soybean	nucleus	27.56	28.53
GSMUA_Achr4P13650_001	Banana	plastid	12.34	28.48
KRH50234	Soybean	nucleus	30.45	28.16
KRH28514	Soybean	nucleus	25.2	28.07
KRH49770	Soybean	nucleus	27.03	28.07
KRH71185	Soybean	nucleus	30.18	27.78
KRH56661	Soybean	nucleus	32.02	26.87
KRH03776	Soybean	nucleus	31.76	26.77
KRH54846	Soybean	nucleus	32.81	26.77
KRH76947	Soybean	nucleus	25.46	26.43
KRH63037	Soybean	nucleus	31.5	25.97
KRH04674	Soybean	nucleus	24.15	25.21

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100789537	MapMan:15.5.2.3	EMBL:ACUP02012724	EnsemblPlantsGene:GLYMA_20G186500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1NHL8	InterPro:IPR017930	EnsemblPlants:KRG92028
ProteinID:KRG92028	ProteinID:KRG92028.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31003	PANTHER:PTHR31003:SF4	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000233DA7F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:42514844..42517772

Molecular Weight (calculated)

42155.1 Da

IEP (calculated)

7.031

GRAVY (calculated)

-0.776

Length

381 amino acids

Sequence
(BLAST)

001: MYFFTEKMQS LKMGFPDYIQ TLEEERRKIQ VFSKELPLSL ELVTQAIETC KQQLSGTTSE YNLNGHSECS EQTTSTEGPV LEEFIPIKKR ASSSSPCCDE
101: DDEQHSHKQR VSKENNNSDK RKSDWLRSVQ LWNPDPPAEE DVSKIVCGVE LKRSGSGGGA FQPLHKEEKS SKPSESLSKT PSSTPVVATS SSAVEPAEEK
201: SLNEGQRKLR RCWSQDLHKR FLHALQQLGG ADSATPKQIR ELMNVDGLTN DEVKSHLQKY RLHTRRPIPM VHNSSDPQAA PFVLVGNIFV QSPEYAAVAT
301: STASREVATV AAPARIYAPV ATHPTPVSHP PDDSIKKPQF KKVKLFELSN SDDRANHSEG AVHSNSPTSS SSTHTSTSPG Y

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.