CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87942
EER96335
EER98643
EES09373
EES16732
EES17536
KXG31298
KXG38092

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	EES09373	AT1G35670.1	19130088
AT1G25550.1	EES16732	AT1G35670.1	19130088
AT1G68670.1	EES17536	AT1G22630.1	21798944
AT1G68670.1	EER96335	AT2G04630.1	21798944
AT1G68670.1	KXG38092	AT2G04630.1	21798944
AT1G68670.1	EER87942	AT3G05530.1	21798944
AT1G68670.1	KXG31298	AT3G05530.1	21798944
AT1G68670.1	EER98643	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023411_P001	Maize	nucleus	80.3	81.9
Zm00001d023402_P001	Maize	nucleus	80.95	81.48
Os02t0325600-01	Rice	nucleus	58.87	66.02
TraesCS2D01G119100.1	Wheat	nucleus	55.63	63.93
TraesCS2B01G135600.1	Wheat	nucleus	46.97	62.0
TraesCS2A01G116100.2	Wheat	plastid	55.41	53.89
GSMUA_Achr6P09870_001	Banana	nucleus	37.88	51.47
HORVU2Hr1G020140.3	Barley	nucleus, plastid	56.06	50.1
VIT_01s0011g03110.t01	Wine grape	nucleus	38.1	49.44
GSMUA_Achr8P18270_001	Banana	nucleus	39.18	48.79
GSMUA_Achr11P...	Banana	nucleus	38.96	48.78
GSMUA_Achr3P21090_001	Banana	nucleus	39.18	48.53
GSMUA_Achr10P...	Banana	nucleus	32.25	48.06
AT1G25550.1	Thale cress	nucleus	35.06	47.09
PGSC0003DMT400002162	Potato	nucleus	36.8	45.21
CDY51129	Canola	nucleus	30.09	43.44
CDY20522	Canola	nucleus	30.74	43.03
Solyc05g009720.2.1	Tomato	nucleus	37.01	42.75
AT1G68670.1	Thale cress	nucleus	32.25	42.09
CDX81535	Canola	nucleus	31.17	41.98
Bra004330.1-P	Field mustard	nucleus	32.03	41.23
KRG92028	Soybean	nucleus	33.98	41.21
KRH34759	Soybean	nucleus	33.98	40.99
CDX95998	Canola	nucleus	31.82	40.95
KRH75476	Soybean	nucleus	33.55	40.9
CDY54503	Canola	nucleus	32.47	40.76
Bra038360.1-P	Field mustard	nucleus	32.25	40.49
CDY38609	Canola	nucleus	31.6	40.44
KRH70595	Soybean	nucleus	32.47	40.43
CDY04180	Canola	nucleus	29.22	40.06
Bra012471.1-P	Field mustard	nucleus	28.36	39.82
CDX83554	Canola	nucleus	30.09	39.27
AT1G13300.1	Thale cress	nucleus	29.22	39.24
CDY16075	Canola	nucleus	29.44	38.97
CDY19382	Canola	nucleus	28.57	38.82
CDY13584	Canola	nucleus	29.87	38.66
CDY39188	Canola	nucleus	28.79	38.22
Bra017349.1-P	Field mustard	nucleus	29.44	37.99
CDX97993	Canola	nucleus	28.36	37.97
Bra025161.1-P	Field mustard	nucleus	30.74	37.57
CDY50179	Canola	nucleus	27.71	36.99
CDY21091	Canola	nucleus	27.71	36.99
Bra016734.1-P	Field mustard	nucleus	27.71	36.99
AT3G25790.1	Thale cress	nucleus	28.57	36.97
Bra019824.1-P	Field mustard	nucleus	28.36	35.89
KXG37487	Sorghum	nucleus	21.21	28.66
EER95793	Sorghum	nucleus	23.38	27.48
OQU79454	Sorghum	nucleus	22.94	26.04
EES02372	Sorghum	nucleus	27.71	25.5

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EntrezGene:8074892	UniProt:C5YRS2	ncoils:Coil	EnsemblPlants:EES15678
ProteinID:EES15678	ProteinID:EES15678.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0045892	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF16	InterPro:SANT/Myb	EnsemblPlantsGene:SORBI_3008G036900	SUPFAM:SSF46689
unigene:Sbi.1926	TIGRFAMs:TIGR01557	UniParc:UPI0001A88579	RefSeq:XP_002441840.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:3491061..3493226

Molecular Weight (calculated)

49372.3 Da

IEP (calculated)

6.451

GRAVY (calculated)

-0.736

Length

462 amino acids

Sequence
(BLAST)

001: MEMDPPPPPP LHADNRRRRR CREYLLALEE EERKIRVFQR ELPLCLDLVT QTIEEMRSHM DSVVVGSEEE TVSDHGGGPV LEEFMPLKPT LSSSSSEDDD
101: DDEHDSSRHH QHRAAGVGDD DKKNDEASGD PETAAALASS RRPLLPQPET KKAMPDWLQS VQLWSNQQQP PPQQQHQDEL LLPCRPVALN AYRKPGGAFQ
201: PFEKDKDKEK QRGELPLPAS SSAAASSAVV GDSCCDRAGG ATDTDTAENT NKLSIKGGKD KEAQSSSQAP GRKPRRCWAP ELHRRFLQAL QQLGGSHAAT
301: PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPNSTTAVAV QSGGTSVVAP PTAPQFVVVG GIWVPPPEYA AAAAAAAAAA AAAAASQPQQ APHLASTGDA
401: SGTPTATANK VYAPVATTLT TPGLLQPRPE RQSSSCSGGR RSGDACSGSP AVSSSSSQTT SA

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.