Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017349.1-P | Field mustard | nucleus | 95.4 | 92.74 |
| CDY04180 | Canola | nucleus | 89.37 | 92.28 |
| CDY13584 | Canola | nucleus | 80.75 | 78.71 |
| CDX83554 | Canola | nucleus | 75.29 | 74.01 |
| AT3G25790.1 | Thale cress | nucleus | 73.28 | 71.43 |
| CDY50179 | Canola | nucleus | 58.33 | 58.67 |
| CDY21091 | Canola | nucleus | 57.76 | 58.09 |
| CDX97993 | Canola | nucleus | 57.47 | 57.97 |
| CDY16075 | Canola | nucleus | 58.05 | 57.88 |
| CDY19382 | Canola | nucleus | 56.32 | 57.65 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 46.84 | 45.79 |
| CDY20522 | Canola | nucleus | 43.1 | 45.45 |
| CDY51129 | Canola | nucleus | 41.38 | 45.0 |
| CDX81535 | Canola | nucleus | 43.39 | 44.02 |
| PGSC0003DMT400002162 | Potato | nucleus | 46.26 | 42.82 |
| CDY54503 | Canola | nucleus | 45.11 | 42.66 |
| CDX95998 | Canola | nucleus | 42.82 | 41.5 |
| Solyc05g009720.2.1 | Tomato | nucleus | 47.13 | 41.0 |
| CDY38609 | Canola | nucleus | 41.95 | 40.44 |
| GSMUA_Achr11P... | Banana | nucleus | 39.08 | 36.86 |
| GSMUA_Achr10P... | Banana | nucleus | 31.9 | 35.81 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 26.72 | 35.09 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 37.36 | 35.04 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 34.2 | 35.0 |
| Os02t0325600-01 | Rice | nucleus | 39.66 | 33.5 |
| CDY59732 | Canola | nucleus | 24.43 | 33.2 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 38.22 | 33.08 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 35.34 | 32.98 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 28.16 | 31.82 |
| CDY40421 | Canola | nucleus | 14.37 | 30.67 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 30.46 | 30.29 |
| CDX75610 | Canola | nucleus | 27.3 | 29.23 |
| CDX69259 | Canola | nucleus | 27.01 | 29.19 |
| CDY42715 | Canola | nucleus | 24.43 | 28.91 |
| EES15678 | Sorghum | nucleus | 38.22 | 28.79 |
| CDY72117 | Canola | nucleus | 14.94 | 28.42 |
| CDY44057 | Canola | nucleus | 26.15 | 28.35 |
| TraesCS2A01G116100.2 | Wheat | plastid | 37.64 | 27.58 |
| CDY51048 | Canola | nucleus | 23.85 | 27.57 |
| Zm00001d023411_P001 | Maize | nucleus | 35.63 | 27.37 |
| Zm00001d023402_P001 | Maize | nucleus | 35.92 | 27.23 |
| CDY71327 | Canola | nucleus | 25.29 | 26.35 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.36 | 26.06 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 37.64 | 25.34 |
| CDY70722 | Canola | nucleus | 21.26 | 24.1 |
| CDY51214 | Canola | nucleus | 28.74 | 23.64 |
| CDY02988 | Canola | nucleus | 28.74 | 23.64 |
| CDY71874 | Canola | nucleus | 23.28 | 22.44 |
| CDX69206 | Canola | nucleus | 10.06 | 22.44 |
| CDY22459 | Canola | nucleus | 25.0 | 21.38 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 11.78 | 20.3 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078HQZ3 | UniProt:A0A078HQZ3 | EnsemblPlants:CDY39188 | ProteinID:CDY39188 |
| ProteinID:CDY39188.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00067391001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF16 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EEAB0E | SEG:seg |
Description
BnaC09g21560DBnaC09g21560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQZ3]
Coordinates
chrLK032442:-:317782..320072
Molecular Weight (calculated)
39107.9 Da
IEP (calculated)
7.024
GRAVY (calculated)
-0.880
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MINSLSNMKN YNEKRVRCCE YIKALEEERR KINVFQRELP LCLELVTQAI ETYKKEISEP TMENLCGQSE CSEQTTGECG GILDLFRPIK HSSTSLEGEE
101: EEVDVDDEHE SNETGLDCDD KNMKSEWLKS VQLWNQPDSV LSNKLERSQQ ETETVVEAIN GNDNGTTISG RQKMEAEKDI SGGSGGSGGI GRRKHRRCWS
201: HELHRRFLNT LKQLGGPHVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHT RRPGQTIPNK RDSQTQHFVV VGGIWVPQAS HSTANAATAG ETTIGIYGPL
301: QSEWPSQSNF GRTISEERSR CSNKGIIRCS SPAMSSSTRT KTKDPKLS
101: EEVDVDDEHE SNETGLDCDD KNMKSEWLKS VQLWNQPDSV LSNKLERSQQ ETETVVEAIN GNDNGTTISG RQKMEAEKDI SGGSGGSGGI GRRKHRRCWS
201: HELHRRFLNT LKQLGGPHVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHT RRPGQTIPNK RDSQTQHFVV VGGIWVPQAS HSTANAATAG ETTIGIYGPL
301: QSEWPSQSNF GRTISEERSR CSNKGIIRCS SPAMSSSTRT KTKDPKLS
001: MIKNLSNMKN DNQKREKCCE YIEALEEERR KINVFQRELP LCVELVTQAI EAYKREISGT STDNLYGQSE CSEQTTGECG RILDLFIPIK HSSTSIEEEV
101: DDKDDDDEEH QSHETDIDFD DKNMKSEWLK SVQLWNQSDA VVSNNRQDRS QEKTETLVEL IKINDEAAKK NNNIKSPVTT SDGGSGGGGG RRGQRKNRRC
201: WSQELHRRFL NALKQLGGPH VATPKQIRDI MKVDGLTNDE VKSHLQKYRL HARRPSQTTP NNRNSQTQHF VVVGGIWVPQ TNHSTANAVN AVASGETTGI
301: YGPMVSSLPS EWPRHSNFGR KISEDRSRCS NNGFFRCSSP AMSCSTRTKT KDAKIIS
101: DDKDDDDEEH QSHETDIDFD DKNMKSEWLK SVQLWNQSDA VVSNNRQDRS QEKTETLVEL IKINDEAAKK NNNIKSPVTT SDGGSGGGGG RRGQRKNRRC
201: WSQELHRRFL NALKQLGGPH VATPKQIRDI MKVDGLTNDE VKSHLQKYRL HARRPSQTTP NNRNSQTQHF VVVGGIWVPQ TNHSTANAVN AVASGETTGI
301: YGPMVSSLPS EWPRHSNFGR KISEDRSRCS NNGFFRCSSP AMSCSTRTKT KDAKIIS
Arabidopsis Description
HHO1Transcription factor HHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS00]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.