Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY41709 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G03500.1 | CDY41709 | AT5G22355.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70722 | Canola | nucleus | 83.66 | 98.37 |
| Bra026548.1-P | Field mustard | nucleus | 96.12 | 82.23 |
| CDY02988 | Canola | nucleus | 85.04 | 72.58 |
| CDY51214 | Canola | nucleus | 84.49 | 72.1 |
| AT2G03500.1 | Thale cress | nucleus | 84.49 | 70.6 |
| KRH03776 | Soybean | nucleus | 51.25 | 40.93 |
| KRH56661 | Soybean | nucleus | 50.69 | 40.31 |
| VIT_11s0016g04600.t01 | Wine grape | nucleus | 51.25 | 40.22 |
| KRH54846 | Soybean | nucleus | 50.97 | 39.4 |
| KRH63037 | Soybean | nucleus | 49.58 | 38.74 |
| GSMUA_Achr6P05330_001 | Banana | nucleus | 44.32 | 37.91 |
| Solyc12g006800.1.1 | Tomato | nucleus | 44.32 | 36.45 |
| PGSC0003DMT400078136 | Potato | nucleus | 44.6 | 36.18 |
| GSMUA_Achr10P... | Banana | nucleus | 38.78 | 35.09 |
| CDY40421 | Canola | nucleus | 15.51 | 34.36 |
| CDY72117 | Canola | nucleus | 15.79 | 31.15 |
| TraesCS3B01G144100.1 | Wheat | nucleus | 40.44 | 30.93 |
| TraesCS3A01G123700.1 | Wheat | nucleus | 40.17 | 30.72 |
| TraesCS3D01G125300.1 | Wheat | nucleus | 40.17 | 30.72 |
| EES02372 | Sorghum | nucleus | 41.0 | 29.48 |
| Os01t0176700-01 | Rice | nucleus | 38.23 | 28.93 |
| HORVU3Hr1G022960.5 | Barley | nucleus | 39.89 | 27.64 |
| CDY42715 | Canola | nucleus | 21.88 | 26.87 |
| Zm00001d039637_P001 | Maize | nucleus | 39.61 | 26.68 |
| CDX69259 | Canola | nucleus | 23.55 | 26.4 |
| CDX69206 | Canola | nucleus | 11.36 | 26.28 |
| CDY51129 | Canola | nucleus | 23.27 | 26.25 |
| CDX95998 | Canola | nucleus | 26.04 | 26.18 |
| CDY54503 | Canola | nucleus | 26.32 | 25.82 |
| CDY59732 | Canola | nucleus | 18.28 | 25.78 |
| CDY50179 | Canola | nucleus | 24.65 | 25.72 |
| CDX81535 | Canola | nucleus | 24.38 | 25.66 |
| CDY44057 | Canola | nucleus | 22.71 | 25.55 |
| CDX75610 | Canola | nucleus | 22.99 | 25.54 |
| CDY20522 | Canola | nucleus | 23.27 | 25.45 |
| CDY21091 | Canola | nucleus | 24.38 | 25.43 |
| CDY19382 | Canola | nucleus | 23.82 | 25.29 |
| CDY51048 | Canola | nucleus | 21.05 | 25.25 |
| CDX97993 | Canola | nucleus | 24.1 | 25.22 |
| CDY38609 | Canola | nucleus | 25.21 | 25.21 |
| CDX83554 | Canola | nucleus | 24.65 | 25.14 |
| CDY13584 | Canola | nucleus | 24.1 | 24.37 |
| CDY16075 | Canola | nucleus | 23.55 | 24.36 |
| CDY04180 | Canola | nucleus | 22.44 | 24.04 |
| CDY39188 | Canola | nucleus | 22.44 | 23.28 |
| CDY71327 | Canola | nucleus | 21.05 | 22.75 |
| CDY22459 | Canola | nucleus | 20.5 | 18.18 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 7.2 | 12.87 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078JYW0 | UniProt:A0A078JYW0 | EnsemblPlants:CDY71874 | ProteinID:CDY71874 |
| ProteinID:CDY71874.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00020987001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31003 | PANTHER:PTHR31003:SF3 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EEE6AC |
| SEG:seg | : | : | : | : | : |
Description
BnaAnng39110DBnaAnng39110D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JYW0]
Coordinates
chrLK047911:+:2..1773
Molecular Weight (calculated)
39752.7 Da
IEP (calculated)
7.790
GRAVY (calculated)
-1.006
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: NKISVEVYRQ QLEAYRENSN NSNQSVVARP VLEEFIPLRN QPEKENNKGN NWMTTAQLWS QPETKPKNID PTTDQSPKDE LASSPKLGHF DVKQRNGGGA
101: FLPFSKEKTL PELALSTEVK RVSPANEHTN DHDCNGESII NGSNNNNNNN SSTTSQSNRK ARRCWSPDLH RRFVQALQML GGSQVATPKQ IRELMKVDGL
201: TNDEVKSHLQ KYRLHTRRPS PSPSPQTSSG QGPHLVVLGG IWVPPEYTTA HGGTPTLYHH QVQNHQGNAA AQPPPHFCSS QEFYTARPPP QQLHHHHFQT
301: CNGSSADGSA STDSAHQLTD SAADDGKSLE SGGGERKGLA ALREESGNQS NINGSEITLK F
101: FLPFSKEKTL PELALSTEVK RVSPANEHTN DHDCNGESII NGSNNNNNNN SSTTSQSNRK ARRCWSPDLH RRFVQALQML GGSQVATPKQ IRELMKVDGL
201: TNDEVKSHLQ KYRLHTRRPS PSPSPQTSSG QGPHLVVLGG IWVPPEYTTA HGGTPTLYHH QVQNHQGNAA AQPPPHFCSS QEFYTARPPP QQLHHHHFQT
301: CNGSSADGSA STDSAHQLTD SAADDGKSLE SGGGERKGLA ALREESGNQS NINGSEITLK F
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
Arabidopsis Description
EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.