Factsheet for GSMUA_Achr6P05330_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	69.19	73.18
KRH03776	Soybean	nucleus	60.66	56.64
KRH56661	Soybean	nucleus	60.66	56.39
VIT_11s0016g04600.t01	Wine grape	nucleus	59.48	54.57
KRH54846	Soybean	nucleus	57.11	51.61
KRH63037	Soybean	nucleus	55.92	51.08
CDY02988	Canola	nucleus	48.34	48.23
Solyc12g006800.1.1	Tomato	nucleus	50.0	48.06
Bra025115.1-P	Field mustard	nucleus	48.1	47.99
TraesCS3D01G125300.1	Wheat	nucleus	53.55	47.88
CDY51214	Canola	nucleus	47.87	47.75
TraesCS3A01G123700.1	Wheat	nucleus	53.32	47.67
PGSC0003DMT400078136	Potato	nucleus	50.24	47.64
TraesCS3B01G144100.1	Wheat	nucleus	53.08	47.46
Bra026548.1-P	Field mustard	nucleus	47.16	47.16
AT2G03500.1	Thale cress	nucleus	47.87	46.76
EES02372	Sorghum	nucleus	54.27	45.62
CDY70722	Canola	nucleus	32.7	44.95
Os01t0176700-01	Rice	nucleus	50.47	44.65
CDY71874	Canola	nucleus	37.91	44.32
HORVU3Hr1G022960.5	Barley	nucleus	53.55	43.38
Zm00001d039637_P001	Maize	nucleus	53.55	42.16
GSMUA_Achr10P...	Banana	nucleus	27.25	37.1
GSMUA_Achr6P09870_001	Banana	nucleus	29.38	36.47
GSMUA_Achr1P23220_001	Banana	nucleus	22.75	36.23
GSMUA_Achr7P00660_001	Banana	nucleus	28.91	35.99
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	27.49	34.73
GSMUA_Achr3P21090_001	Banana	nucleus	30.57	34.58
GSMUA_Achr4P28210_001	Banana	nucleus	26.07	34.16
GSMUA_Achr8P18270_001	Banana	nucleus	29.62	33.69
GSMUA_Achr11P...	Banana	nucleus	28.67	32.79
GSMUA_Achr6P34680_001	Banana	nucleus	29.38	32.72
GSMUA_Achr10P...	Banana	nucleus	29.86	32.47
GSMUA_Achr9P26570_001	Banana	nucleus	29.86	32.14
GSMUA_Achr10P...	Banana	nucleus	28.91	31.2
GSMUA_Achr2P13380_001	Banana	nucleus	26.54	30.6
GSMUA_Achr4P32500_001	Banana	nucleus	24.64	30.59
GSMUA_Achr4P13650_001	Banana	plastid	11.85	30.3
GSMUA_Achr4P03680_001	Banana	nucleus	21.8	29.87
GSMUA_Achr4P23210_001	Banana	nucleus	26.07	29.57
GSMUA_Achr6P00650_001	Banana	nucleus	25.83	28.76

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSMUA_Achr6G05330_001	EnsemblPlants:GSMUA_Achr6P05330_001	EnsemblPlants:GSMUA_Achr6T05330_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0T4D1
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF3
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00029514E5	SEG:seg	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G05330_001]

Coordinates

chr6:+:3591703..3593462

Molecular Weight (calculated)

46043.0 Da

IEP (calculated)

5.877

GRAVY (calculated)

-0.717

Length

422 amino acids

Sequence
(BLAST)

001: MASPAELSLD YKPNSYTMIQ KQIGEQPDQT QKIQDFLARL EEERHKIDAF KRELPLCMQL LNNAIECYKQ QLETYQTNQG PRPVLEEFIP LKHMNMDGSD
101: KDPSAHSEKA SWMVSAQLWS PPVDAAKQQP VPPPKETEQA FDVSPKLSLD TKQRNGGAFL PFSKEKSKAA RSASRALSEL ALASPEKVGG SSSATEGQAA
201: APPTHRKARR CWSPDLHRRF VNALQILGGS QVATPKQIRE LMKVDGLTND EVKSHLQKYR LHTRRPAPAP QAAAAAAPQL VVLGGIWVPP EYATSAAAAA
301: AAGPAIYGAH AAPAHYCAAT PVPQEFYPPP PPVAHHHHLH PPLHRGAAAY KGRSSGSPES EVRSGGERSE SIEEEEEGEE REEDEEEEEE EEGTPSMEEK
401: ALLPLPVKAE DGNGGGNVAL KF

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.