CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY41709

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03500.1	CDY41709	AT5G22355.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51214	Canola	nucleus	97.64	97.64
AT2G03500.1	Thale cress	nucleus	89.36	87.5
CDY70722	Canola	nucleus	63.36	87.3
CDY71874	Canola	nucleus	72.58	85.04
KRH03776	Soybean	nucleus	55.08	51.55
VIT_11s0016g04600.t01	Wine grape	nucleus	55.08	50.65
KRH56661	Soybean	nucleus	54.14	50.44
KRH54846	Soybean	nucleus	53.66	48.61
GSMUA_Achr6P05330_001	Banana	nucleus	48.23	48.34
KRH63037	Soybean	nucleus	52.72	48.27
Solyc12g006800.1.1	Tomato	nucleus	48.23	46.47
PGSC0003DMT400078136	Potato	nucleus	48.46	46.07
GSMUA_Achr10P...	Banana	nucleus	41.61	44.11
TraesCS3B01G144100.1	Wheat	nucleus	41.84	37.5
TraesCS3D01G125300.1	Wheat	nucleus	41.61	37.29
TraesCS3A01G123700.1	Wheat	nucleus	41.61	37.29
CDY40421	Canola	nucleus	13.71	35.58
Os01t0176700-01	Rice	nucleus	39.72	35.22
EES02372	Sorghum	nucleus	41.61	35.06
CDY42715	Canola	nucleus	24.11	34.69
CDX69259	Canola	nucleus	26.0	34.16
CDY59732	Canola	nucleus	20.57	33.98
CDX75610	Canola	nucleus	25.77	33.54
HORVU3Hr1G022960.5	Barley	nucleus	41.13	33.4
Zm00001d039637_P001	Maize	nucleus	41.13	32.46
CDY44057	Canola	nucleus	24.59	32.4
CDY72117	Canola	nucleus	13.95	32.24
CDY51048	Canola	nucleus	22.7	31.89
CDY50179	Canola	nucleus	25.53	31.21
CDY51129	Canola	nucleus	23.4	30.94
CDY21091	Canola	nucleus	25.3	30.92
CDX95998	Canola	nucleus	26.24	30.92
CDY20522	Canola	nucleus	24.11	30.91
CDY19382	Canola	nucleus	24.59	30.59
CDX97993	Canola	nucleus	24.82	30.43
CDX81535	Canola	nucleus	24.59	30.32
CDX83554	Canola	nucleus	25.3	30.23
CDY38609	Canola	nucleus	25.77	30.19
CDY54503	Canola	nucleus	26.24	30.16
CDY13584	Canola	nucleus	25.06	29.69
CDY04180	Canola	nucleus	23.4	29.38
CDY16075	Canola	nucleus	24.11	29.23
CDY71327	Canola	nucleus	22.93	29.04
CDY39188	Canola	nucleus	23.64	28.74
CDX69206	Canola	nucleus	9.46	25.64
CDY22459	Canola	nucleus	23.4	24.32
CDY29342	Canola	cytosol, mitochondrion, nucleus	11.58	24.26

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:A0A078ETU5	EnsemblPlants:CDY02988	ProteinID:CDY02988	ProteinID:CDY02988.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00115286001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31003	PANTHER:PTHR31003:SF3	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0004EC1B16
SEG:seg	:	:	:	:	:

Description

BnaC07g22390D

Coordinates

chrLK031939:-:116983..119780

Molecular Weight (calculated)

46909.3 Da

IEP (calculated)

7.019

GRAVY (calculated)

-0.924

Length

423 amino acids

Sequence
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGENFQSD QTTQKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NNNNQSVVTR PVLEEFIPLR
101: NQPEKANNWM TTAQLWSQPE TKPKSIDQTT DQSPKDELAS SPKLGHVDAK QRNGGGAFHP FSKEQHLPEL ALSTEVKRFS PTNEHPNDHG NDESIINSGK
201: NNNNNINSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG GQGPHLVVLG
301: GIWVPPEYTT AHGGTPTLYH HQVHHHHGNA ATQPPQHFCS SQEFYTTPPT PQPLHHQHFQ TFNGSSAGGA TSNDSAHHQL TDSATDEGKS LESGGGEGKG
401: LAALREEGED QSNINGSEIT LKF

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.