Factsheet for HORVU3Hr1G022960.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G125300.1	Wheat	nucleus	85.6	94.49
TraesCS3A01G123700.1	Wheat	nucleus	85.22	94.07
TraesCS3B01G144100.1	Wheat	nucleus	84.84	93.64
EES02372	Sorghum	nucleus	63.34	65.74
Os01t0176700-01	Rice	nucleus	59.88	65.41
Zm00001d039637_P001	Maize	nucleus	63.72	61.94
GSMUA_Achr6P05330_001	Banana	nucleus	43.38	53.55
GSMUA_Achr10P...	Banana	nucleus	36.85	48.12
VIT_11s0016g04600.t01	Wine grape	nucleus	40.88	46.3
KRH56661	Soybean	nucleus	40.12	46.04
KRH03776	Soybean	nucleus	39.92	46.02
KRH54846	Soybean	nucleus	38.77	43.25
PGSC0003DMT400078136	Potato	nucleus	36.47	42.7
KRH63037	Soybean	nucleus	37.62	42.42
Solyc12g006800.1.1	Tomato	nucleus	35.51	42.14
Bra026548.1-P	Field mustard	nucleus	33.78	41.71
CDY02988	Canola	nucleus	33.4	41.13
Bra025115.1-P	Field mustard	nucleus	33.21	40.9
CDY51214	Canola	nucleus	33.21	40.9
AT2G03500.1	Thale cress	nucleus	33.4	40.28
CDY71874	Canola	nucleus	27.64	39.89
CDY70722	Canola	nucleus	23.22	39.41
HORVU2Hr1G006350.1	Barley	plastid	9.79	38.06
HORVU6Hr1G034270.1	Barley	plastid	9.4	36.57
HORVU5Hr1G018220.2	Barley	nucleus	21.5	29.63
HORVU2Hr1G062670.3	Barley	plastid	22.46	27.02
HORVU2Hr1G020140.3	Barley	nucleus, plastid	25.72	25.92
HORVU4Hr1G032990.1	Barley	cytosol	2.5	20.63
HORVU5Hr1G097560.4	Barley	nucleus, plastid	18.04	20.61

Protein Annotations

MapMan:15.5.2.3	UniProt:A0A287KFC4	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009266	GO:GO:0009628
GO:GO:0009719	GO:GO:0009740	GO:GO:0009791	GO:GO:0009987	GO:GO:0010452	GO:GO:0016043
GO:GO:0019538	GO:GO:0048579	GO:GO:1903507	EnsemblPlantsGene:HORVU3Hr1G022960	EnsemblPlants:HORVU3Hr1G022960.5	InterPro:Homeobox-like_sf
InterPro:Myb_dom_plants	PANTHER:PTHR31003	PANTHER:PTHR31003:SF3	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000B47AB12
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:84790163..84792548

Molecular Weight (calculated)

55787.4 Da

IEP (calculated)

6.544

GRAVY (calculated)

-0.608

Length

521 amino acids

Sequence
(BLAST)

001: MDSSPSDLTL DYTPNGNGTA AASGGYPKQA SPVVDHRHHL TPEQATTQKL QEFLARLDDE RLKIDAFKRE LPLCMQLLNQ AMEAYRQQLE ACQMGSHGAA
101: AARAPLVLEE FIPLKNIGID EAEKAAGNAP SEKASWMVSA QLWNGPATGD AAAKGPQTPK ERSEHPLDTS PMLGALDGGG GAFLPFSKEK ACMAESAALP
201: ELGLAPAEKD READRKPYHD AGGSNGTVVS RRDVGAPPTS TAPEGQSVPP APQTNRKARR CWSPELHRRF VNALQILGGA QGIHTQTSIC NDLTIWRCMK
301: LTGWIVITCV LKTDSKSPSS VCKLIKVATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR PMPAPSAPPA GAPQLVVLGG IWMPPDYAAQ GAGPAAIYGA
401: HPATQAHYTA AVSAQEYYQS AAAAAHHGHH MQHHPAASMV HHRAVAPPPP PPPPQHQPVY KVHPVSAAGS QGSSEGRRSS GGGRERSESI EEEGEEREEE
501: DDDDNDDHGM AANGDAEQIN Y

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.