Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY41709 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G03500.1 | CDY41709 | AT5G22355.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71874 | Canola | nucleus | 98.37 | 83.66 |
| Bra026548.1-P | Field mustard | nucleus | 97.07 | 70.62 |
| CDY02988 | Canola | nucleus | 87.3 | 63.36 |
| CDY51214 | Canola | nucleus | 86.64 | 62.88 |
| AT2G03500.1 | Thale cress | nucleus | 85.99 | 61.11 |
| KRH03776 | Soybean | nucleus | 53.42 | 36.28 |
| KRH56661 | Soybean | nucleus | 53.42 | 36.12 |
| VIT_11s0016g04600.t01 | Wine grape | nucleus | 53.09 | 35.43 |
| KRH54846 | Soybean | nucleus | 53.09 | 34.9 |
| KRH63037 | Soybean | nucleus | 51.79 | 34.42 |
| GSMUA_Achr6P05330_001 | Banana | nucleus | 44.95 | 32.7 |
| GSMUA_Achr10P... | Banana | nucleus | 41.69 | 32.08 |
| PGSC0003DMT400078136 | Potato | nucleus | 44.95 | 31.01 |
| Solyc12g006800.1.1 | Tomato | nucleus | 44.3 | 30.98 |
| CDY40421 | Canola | nucleus | 16.29 | 30.67 |
| CDY72117 | Canola | nucleus | 16.61 | 27.87 |
| CDX69206 | Canola | nucleus | 13.36 | 26.28 |
| TraesCS3B01G144100.1 | Wheat | nucleus | 39.74 | 25.85 |
| TraesCS3A01G123700.1 | Wheat | nucleus | 39.41 | 25.64 |
| TraesCS3D01G125300.1 | Wheat | nucleus | 39.41 | 25.64 |
| CDY42715 | Canola | nucleus | 24.1 | 25.17 |
| CDX69259 | Canola | nucleus | 26.06 | 24.84 |
| EES02372 | Sorghum | nucleus | 40.39 | 24.7 |
| Os01t0176700-01 | Rice | nucleus | 37.46 | 24.11 |
| CDX75610 | Canola | nucleus | 25.41 | 24.0 |
| CDY44057 | Canola | nucleus | 24.76 | 23.68 |
| CDY51129 | Canola | nucleus | 24.43 | 23.44 |
| CDY50179 | Canola | nucleus | 26.38 | 23.41 |
| CDY19382 | Canola | nucleus | 25.73 | 23.24 |
| HORVU3Hr1G022960.5 | Barley | nucleus | 39.41 | 23.22 |
| CDX97993 | Canola | nucleus | 26.06 | 23.19 |
| CDY21091 | Canola | nucleus | 26.06 | 23.12 |
| CDY20522 | Canola | nucleus | 24.76 | 23.03 |
| CDX95998 | Canola | nucleus | 26.71 | 22.84 |
| CDY51048 | Canola | nucleus | 22.15 | 22.59 |
| CDY54503 | Canola | nucleus | 27.04 | 22.55 |
| CDX83554 | Canola | nucleus | 25.73 | 22.32 |
| CDY59732 | Canola | nucleus | 18.57 | 22.27 |
| Zm00001d039637_P001 | Maize | nucleus | 38.76 | 22.2 |
| CDY38609 | Canola | nucleus | 26.06 | 22.16 |
| CDX81535 | Canola | nucleus | 24.76 | 22.16 |
| CDY04180 | Canola | nucleus | 24.1 | 21.96 |
| CDY16075 | Canola | nucleus | 24.76 | 21.78 |
| CDY13584 | Canola | nucleus | 25.08 | 21.57 |
| CDY39188 | Canola | nucleus | 24.1 | 21.26 |
| CDY71327 | Canola | nucleus | 22.15 | 20.36 |
| CDY22459 | Canola | nucleus | 22.15 | 16.71 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 5.86 | 8.91 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078JYJ1 | UniProt:A0A078JYJ1 | EnsemblPlants:CDY70722 | ProteinID:CDY70722 |
| ProteinID:CDY70722.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00006935001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 |
| PANTHER:PTHR31003:SF3 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EDFBD1 | SEG:seg |
Description
BnaAnng34750DBnaAnng34750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYJ1]
Coordinates
chrLK043062:-:1308..2981
Molecular Weight (calculated)
33373.4 Da
IEP (calculated)
7.779
GRAVY (calculated)
-0.938
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTAQLWSQP ETKPKNIDLT TDQSPKDELA SSPKLGHFDV KQRNGGGAFL PFSKEKTLPE LALSTEVKRV SPANEHTNDH DCNGESIING SNNNNNNNSS
101: TTSQSNRKAR RCWSPDLHRR FVQALQMLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPSPS PQTSGGQGPH LVVLGGIWVP PEYTTAHGGT
201: PTLYHHQVQN HQGNAAAQPP PHFCSSQEFY TARPPPQQLH HHHFQTCNGS SADGSASTDS ALQLTDSAGD DGKSPESGGG ERKGLAALRE ESGNQSNING
301: SEITLKF
101: TTSQSNRKAR RCWSPDLHRR FVQALQMLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPSPS PQTSGGQGPH LVVLGGIWVP PEYTTAHGGT
201: PTLYHHQVQN HQGNAAAQPP PHFCSSQEFY TARPPPQQLH HHHFQTCNGS SADGSASTDS ALQLTDSAGD DGKSPESGGG ERKGLAALRE ESGNQSNING
301: SEITLKF
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
Arabidopsis Description
EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.