Factsheet for VIT_11s0016g04600.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56661	Soybean	nucleus	68.48	69.38
KRH03776	Soybean	nucleus	67.61	68.81
KRH63037	Soybean	nucleus	65.87	65.58
KRH54846	Soybean	nucleus	65.43	64.45
GSMUA_Achr6P05330_001	Banana	nucleus	54.57	59.48
Solyc12g006800.1.1	Tomato	nucleus	56.74	59.45
PGSC0003DMT400078136	Potato	nucleus	55.87	57.75
Bra026548.1-P	Field mustard	nucleus	50.65	55.21
GSMUA_Achr10P...	Banana	nucleus	47.83	55.14
CDY02988	Canola	nucleus	50.65	55.08
CDY51214	Canola	nucleus	50.43	54.85
Bra025115.1-P	Field mustard	nucleus	50.22	54.61
AT2G03500.1	Thale cress	nucleus	50.65	53.94
CDY70722	Canola	nucleus	35.43	53.09
CDY71874	Canola	nucleus	40.22	51.25
TraesCS3B01G144100.1	Wheat	nucleus	47.17	45.97
TraesCS3A01G123700.1	Wheat	nucleus	46.96	45.76
TraesCS3D01G125300.1	Wheat	nucleus	46.74	45.55
Os01t0176700-01	Rice	nucleus	45.22	43.61
EES02372	Sorghum	nucleus	46.3	42.43
HORVU3Hr1G022960.5	Barley	nucleus	46.3	40.88
VIT_03s0063g01060.t01	Wine grape	nucleus	35.22	40.4
VIT_01s0011g03110.t01	Wine grape	nucleus	30.22	39.04
Zm00001d039637_P001	Maize	nucleus	45.0	38.62
VIT_07s0197g00060.t01	Wine grape	nucleus	29.13	34.72

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	ProteinID:CCB51553	ProteinID:CCB51553.1	ncoils:Coil	UniProt:F6HH57
EMBL:FN595756	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF3
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00021081FB	ArrayExpress:VIT_11s0016g04600	EnsemblPlantsGene:VIT_11s0016g04600
EnsemblPlants:VIT_11s0016g04600.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:3913885..3916168

Molecular Weight (calculated)

50475.0 Da

IEP (calculated)

7.463

GRAVY (calculated)

-0.767

Length

460 amino acids

Sequence
(BLAST)

001: MASPSELSLD CKPHSYSLLL KSFGDQPDQT QKLEDFLARL EEERLKIEVF KRELPLCMQL LTDAVEASRQ QLQSYRANQG ARPFLEEFIP LKHSTPKGSE
101: KTSNMSDKAN WMTSAQLWSP AGDETKQQST LTSSKEPDIG FTVSPKLGFD NKQRNGGAFL PFSKERNSCP SPNLRVLPDL ALANSADHKD VEDKKCSETE
201: NGIAFSRREN CGKVVNGGAT MEQVKAAITP SEAQTTAAAP TANTQTHRKA RRCWSPDLHR RFVNALQMLG GSQVATPKQI RELMKVDGLT NDEVKSHLQK
301: YRLHTRRPSP SPQATGAAAP QLVVVGLGGI WVPPEYATAA HTGGTTLYGA HPPSHTSPHY CGPPVPQDFY AAPAQPHHHS LHHQLHMYKA SPQTQSSPDS
401: DMRGAGDRSE SIEDGKSESS SWKGESGENG GERKGLVTLR DDGEESNRAM EVRLLSTSNF

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.