Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G03500.1 | KRG95394 | AT5G22355.1 | 21798944 |
| AT2G03500.1 | KRH67075 | AT5G22355.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH03776 | Soybean | nucleus | 93.17 | 93.58 |
| KRH54846 | Soybean | nucleus | 72.25 | 70.24 |
| KRH63037 | Soybean | nucleus | 71.37 | 70.13 |
| VIT_11s0016g04600.t01 | Wine grape | nucleus | 69.38 | 68.48 |
| GSMUA_Achr6P05330_001 | Banana | nucleus | 56.39 | 60.66 |
| Solyc12g006800.1.1 | Tomato | nucleus | 57.49 | 59.45 |
| PGSC0003DMT400078136 | Potato | nucleus | 56.39 | 57.53 |
| GSMUA_Achr10P... | Banana | nucleus | 48.24 | 54.89 |
| Bra026548.1-P | Field mustard | nucleus | 50.88 | 54.74 |
| CDY02988 | Canola | nucleus | 50.44 | 54.14 |
| CDY51214 | Canola | nucleus | 50.44 | 54.14 |
| AT2G03500.1 | Thale cress | nucleus | 51.32 | 53.94 |
| Bra025115.1-P | Field mustard | nucleus | 50.0 | 53.66 |
| CDY70722 | Canola | nucleus | 36.12 | 53.42 |
| CDY71874 | Canola | nucleus | 40.31 | 50.69 |
| TraesCS3B01G144100.1 | Wheat | nucleus | 47.14 | 45.34 |
| TraesCS3D01G125300.1 | Wheat | nucleus | 46.7 | 44.92 |
| TraesCS3A01G123700.1 | Wheat | nucleus | 46.7 | 44.92 |
| Os01t0176700-01 | Rice | nucleus | 45.15 | 42.98 |
| EES02372 | Sorghum | nucleus | 46.26 | 41.83 |
| HORVU3Hr1G022960.5 | Barley | nucleus | 46.04 | 40.12 |
| Zm00001d039637_P001 | Maize | nucleus | 45.37 | 38.43 |
| KRH71185 | Soybean | nucleus | 31.5 | 34.54 |
| KRH50234 | Soybean | nucleus | 31.06 | 34.22 |
| KRG89233 | Soybean | nucleus | 27.53 | 33.97 |
| KRH28514 | Soybean | nucleus | 25.33 | 33.63 |
| KRH49770 | Soybean | nucleus | 26.87 | 33.24 |
| KRH34759 | Soybean | nucleus | 27.97 | 33.16 |
| KRH75476 | Soybean | nucleus | 26.87 | 32.19 |
| KRH70595 | Soybean | nucleus | 26.21 | 32.08 |
| KRG92028 | Soybean | nucleus | 26.87 | 32.02 |
| KRH04674 | Soybean | nucleus | 24.89 | 30.96 |
| KRH76947 | Soybean | nucleus | 24.67 | 30.52 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100807925 | MapMan:15.5.2.3 | EMBL:ACUP02002795 | ncoils:Coil | EnsemblPlantsGene:GLYMA_05G011500 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf | UniProt:I1K1C4 | InterPro:IPR017930 |
| EnsemblPlants:KRH56661 | ProteinID:KRH56661 | ProteinID:KRH56661.1 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 |
| PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF3 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI000233A70D | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:-:1019997..1023129
Molecular Weight (calculated)
49535.2 Da
IEP (calculated)
7.334
GRAVY (calculated)
-0.726
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPSELSLD CKPQSYSLLL KSFGDQTDHS YKLEEFLNRL EEERLKIDAF KRELPLCMQL LTNAMEASRQ QLQAFKVNHG AKPVLEEFIP MKHLASESSE
101: KATNMSDKAN WMTSAQLWSQ ASSEGTKQQP PITTLKESDI GFSISPKLAL DNKQRNGGGA FLPFSKERNS CQGSTLRPLP ELVLASAEKE MEDKKRAEVE
201: IKGVSCQSRK ENSGSDGAVV DQGKGGSPVA SSHAQTTTTT TSAQTHRKAR RCWSPDLHRR FVNALQMLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY
301: RLHTRRPSPS PQAGAAAPQL VVLGGIWVPP EYATAAHTAT PTLYGAHPTS HAPPPHYCAA TPMPQDFYTA APPQPLLPPP PQHHNALHHL HMYKAASHGH
401: GSPESDVPGG GERSESIEDG KSESSSWKGE SGENEGERKG IGEESNGSEI TLKF
101: KATNMSDKAN WMTSAQLWSQ ASSEGTKQQP PITTLKESDI GFSISPKLAL DNKQRNGGGA FLPFSKERNS CQGSTLRPLP ELVLASAEKE MEDKKRAEVE
201: IKGVSCQSRK ENSGSDGAVV DQGKGGSPVA SSHAQTTTTT TSAQTHRKAR RCWSPDLHRR FVNALQMLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY
301: RLHTRRPSPS PQAGAAAPQL VVLGGIWVPP EYATAAHTAT PTLYGAHPTS HAPPPHYCAA TPMPQDFYTA APPQPLLPPP PQHHNALHHL HMYKAASHGH
401: GSPESDVPGG GERSESIEDG KSESSSWKGE SGENEGERKG IGEESNGSEI TLKF
001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF
Arabidopsis Description
EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.