CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50234	Soybean	nucleus	91.79	92.23
VIT_03s0063g01060.t01	Wine grape	nucleus	58.21	60.1
KRG89233	Soybean	nucleus	50.72	57.07
KRH49770	Soybean	nucleus	50.24	56.68
Solyc01g108300.2.1	Tomato	nucleus	55.07	56.3
PGSC0003DMT400066352	Potato	nucleus	54.35	55.97
GSMUA_Achr7P00660_001	Banana	nucleus	37.44	45.72
KRH28514	Soybean	nucleus	36.72	44.44
GSMUA_Achr10P...	Banana	nucleus	40.58	43.3
CDY51048	Canola	nucleus	31.4	43.19
Bra018794.1-P	Field mustard	nucleus	31.4	43.05
KRH76947	Soybean	nucleus	36.72	41.42
CDY71327	Canola	nucleus	33.09	41.02
GSMUA_Achr4P28210_001	Banana	nucleus	31.64	40.68
TraesCS2A01G264800.1	Wheat	nucleus	34.54	40.28
Os07t0119300-01	Rice	nucleus	34.54	40.28
Bra040662.1-P	Field mustard	nucleus	31.64	40.18
GSMUA_Achr6P34680_001	Banana	nucleus	36.72	40.11
AT1G49560.1	Thale cress	nucleus	32.13	39.94
TraesCS2D01G259200.2	Wheat	nucleus	34.3	39.89
CDY59732	Canola	nucleus	24.64	39.84
Zm00001d007962_P001	Maize	extracellular, nucleus	33.09	39.71
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	31.64	39.22
KRH04674	Soybean	nucleus	34.54	39.18
GSMUA_Achr9P26570_001	Banana	nucleus	36.72	38.78
Zm00001d034160_P001	Maize	nucleus	31.64	38.76
GSMUA_Achr10P...	Banana	nucleus	36.47	38.62
KXG37487	Sorghum	nucleus	31.88	38.6
Os03t0764600-01	Rice	nucleus	32.37	38.51
GSMUA_Achr4P23210_001	Banana	nucleus	34.3	38.17
GSMUA_Achr6P00650_001	Banana	nucleus	34.3	37.47
Zm00001d018698_P001	Maize	nucleus	33.33	37.4
TraesCS5A01G401600.1	Wheat	nucleus	29.95	37.13
TraesCS5D01G081000.1	Wheat	nucleus	33.57	37.07
HORVU5Hr1G018220.2	Barley	nucleus	33.82	37.04
TraesCS5A01G068900.2	Wheat	nucleus	33.57	36.77
TraesCS5B01G075300.1	Wheat	nucleus	33.33	36.6
TraesCS5B01G406300.2	Wheat	nucleus	29.47	36.53
GSMUA_Achr4P32500_001	Banana	nucleus	29.95	36.47
GSMUA_Achr2P13380_001	Banana	nucleus	32.13	36.34
Os12t0586300-00	Rice	extracellular	34.54	36.2
EER95793	Sorghum	nucleus	34.3	36.13
Os03t0241001-00	Rice	plastid	12.56	36.11
Zm00001d013202_P001	Maize	nucleus	31.4	35.91
TraesCS2B01G277300.1	Wheat	nucleus	34.78	35.82
Zm00001d030891_P001	Maize	nucleus	31.64	35.79
HORVU2Hr1G006350.1	Barley	plastid	11.11	34.33
HORVU6Hr1G034270.1	Barley	plastid	10.87	33.58
HORVU2Hr1G062670.3	Barley	plastid	35.02	33.49
OQU79454	Sorghum	nucleus	32.61	33.17
KRH56661	Soybean	nucleus	34.54	31.5
KRH63037	Soybean	nucleus	34.78	31.17
KRH03776	Soybean	nucleus	33.82	30.97
TraesCS5D01G411800.1	Wheat	plastid	29.47	30.96
KRH34759	Soybean	nucleus	28.26	30.55
KRH70595	Soybean	nucleus	27.05	30.19
KRG92028	Soybean	nucleus	27.78	30.18
KRH54846	Soybean	nucleus	33.82	29.98
KRH75476	Soybean	nucleus	27.29	29.82
CDY29342	Canola	cytosol, mitochondrion, nucleus	13.77	28.22
HORVU5Hr1G097560.4	Barley	nucleus, plastid	25.6	23.25
HORVU4Hr1G032990.1	Barley	cytosol	2.66	17.46

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100806237	MapMan:15.5.2.3	EMBL:ACUP02000877	EnsemblPlantsGene:GLYMA_02G135400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1JEX5	InterPro:IPR017930	EnsemblPlants:KRH71185
ProteinID:KRH71185	ProteinID:KRH71185.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31003	PANTHER:PTHR31003:SF7	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002337B6A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:14005232..14008459

Molecular Weight (calculated)

45966.5 Da

IEP (calculated)

6.683

GRAVY (calculated)

-0.825

Length

414 amino acids

Sequence
(BLAST)

001: MGSVPAELSL DLRPTFIPKT ITDFLRHLSD NNNPPATLHD FLARLEDELR KIHAFKRELP LSMLLLNDAI SVLKAESQKC RVARDSAPVL EEFIPLKKER
101: GDQSEEEEEE EENDDDDDNE CRDKRNWMSS VQLWNNNTTT ATTNNNNPSD RKQLLHKLQT KKSEEGQSVV EDPFQTCSNI NEGRRAFMPF SRYSSSSSSV
201: PVTTVGLGAA ASKEEKEESV MNRLSLLTPS SVKEGCGSRG SRSSSNRAVS SSSPPMVQPS LRATSLQQTA RKQRRCWSPE LHRRFVNALQ KLGGSQVATP
301: KQIRELMQVD GLTNDEVKSH LQKYRLHTRR VPAASSNQPV VVLGGLWMSQ DQYNDSSKVS SSGSGSPQSP LHLAAGSRGG TSPTEGDSME DDEDARSESF
401: SWKSHMHKAG KVDV

Best Arabidopsis Sequence Match ( AT1G68670.1 )
(BLAST)

001: MMVEMDYAKK MQKCHEYVEA LEEEQKKIQV FQRELPLCLE LVTQAIEACR KELSGTTTTT SEQCSEQTTS VCGGPVFEEF IPIKKISSLC EEVQEEEEED
101: GEHESSPELV NNKKSDWLRS VQLWNHSPDL NPKEERVAKK AKVVEVKPKS GAFQPFQKRV LETDLQPAVK VASSMPATTT SSTTETCGGK SDLIKAGDEE
201: RRIEQQQSQS HTHRKQRRCW SPELHRRFLN ALQQLGGSHV ATPKQIRDHM KVDGLTNDEV KSHLQKYRLH TRRPAATSVA AQSTGNQQQP QFVVVGGIWV
301: PSSQDFPPPS DVANKGGVYA PVAVAQSPKR SLERSCNSPA ASSSTNTNTS TPVS

Arabidopsis Description

HHO2Transcription factor HHO2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.