Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G081000.1 | Wheat | nucleus | 96.02 | 96.53 |
| TraesCS5A01G068900.2 | Wheat | nucleus | 95.76 | 95.5 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 93.9 | 93.65 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 14.85 | 88.89 |
| HORVU6Hr1G034270.1 | Barley | plastid | 27.32 | 76.87 |
| HORVU2Hr1G006350.1 | Barley | plastid | 27.06 | 76.12 |
| Os12t0586300-00 | Rice | extracellular | 70.29 | 67.09 |
| Zm00001d030891_P001 | Maize | nucleus | 64.19 | 66.12 |
| OQU79454 | Sorghum | nucleus | 68.44 | 63.39 |
| Os03t0241001-00 | Rice | plastid | 21.75 | 56.94 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 40.05 | 44.54 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 42.71 | 43.28 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 35.81 | 41.93 |
| GSMUA_Achr10P... | Banana | nucleus | 42.97 | 41.75 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 41.38 | 41.16 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 35.81 | 40.42 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 41.38 | 39.8 |
| GSMUA_Achr10P... | Banana | nucleus | 41.11 | 39.64 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 37.93 | 39.07 |
| TraesCS5B01G406300.2 | Wheat | nucleus | 34.48 | 38.92 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 38.2 | 37.99 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 32.89 | 36.47 |
| CDY40421 | Canola | nucleus | 15.65 | 36.2 |
| CDY72117 | Canola | nucleus | 16.98 | 34.97 |
| CDY42715 | Canola | nucleus | 27.06 | 34.69 |
| TraesCS2B01G277300.1 | Wheat | nucleus | 36.87 | 34.58 |
| PGSC0003DMT400026096 | Potato | nucleus | 33.16 | 34.25 |
| Solyc02g090400.2.1 | Tomato | nucleus | 33.69 | 34.23 |
| CDY51048 | Canola | nucleus | 27.32 | 34.22 |
| KRH28514 | Soybean | nucleus | 31.03 | 34.21 |
| CDX69259 | Canola | nucleus | 29.18 | 34.16 |
| Bra018794.1-P | Field mustard | nucleus | 27.32 | 34.11 |
| PGSC0003DMT400066352 | Potato | nucleus | 36.34 | 34.08 |
| Bra017795.1-P | Field mustard | nucleus | 26.53 | 34.01 |
| KRH50234 | Soybean | nucleus | 37.14 | 33.98 |
| Solyc01g108300.2.1 | Tomato | nucleus | 36.34 | 33.83 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 35.54 | 33.42 |
| Bra010581.1-P | Field mustard | nucleus | 27.59 | 33.33 |
| CDY44057 | Canola | nucleus | 28.38 | 33.33 |
| KRH71185 | Soybean | nucleus | 36.6 | 33.33 |
| CDX75610 | Canola | nucleus | 28.38 | 32.92 |
| Bra011720.1-P | Field mustard | nucleus | 28.38 | 32.92 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 33.69 | 32.9 |
| KRG89233 | Soybean | nucleus | 32.1 | 32.88 |
| KRH49770 | Soybean | nucleus | 31.83 | 32.7 |
| Bra040662.1-P | Field mustard | nucleus | 28.12 | 32.52 |
| CDX69206 | Canola | nucleus | 13.26 | 32.05 |
| CDY71327 | Canola | nucleus | 28.38 | 32.04 |
| CDY59732 | Canola | nucleus | 21.75 | 32.03 |
| AT4G37180.2 | Thale cress | nucleus | 30.77 | 31.96 |
| KRH76947 | Soybean | nucleus | 31.03 | 31.88 |
| AT1G49560.1 | Thale cress | nucleus | 27.85 | 31.53 |
| KRH04674 | Soybean | nucleus | 29.97 | 30.96 |
| CDY22459 | Canola | nucleus | 27.06 | 25.06 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 22.55 | 24.29 |
| TraesCS3B01G144100.1 | Wheat | nucleus | 29.18 | 23.31 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 10.08 | 18.81 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 |
| PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF2 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| EnsemblPlantsGene:TraesCS5B01G075300 | EnsemblPlants:TraesCS5B01G075300.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5B:-:89683295..89685729
Molecular Weight (calculated)
40388.9 Da
IEP (calculated)
7.944
GRAVY (calculated)
-0.708
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSAVQKEA VVLNGGGSGA GEDHRLRALA ARTVTDSLRA AVARSSAADK AARLEECARS LEAEKAKMEV FRRELPISVH LIADVIEWLK DEVAQHRRPA
101: PDQLLAPAPS PSPAPPEKRK AEVVKTEADA SDKRSWMSSA QLWTCGSHSS TSNSNGDSVK KHAQKVSNAF MPLNGLPTLA KSSERPEAAA MAVPELSFSS
201: PAIDAPCPAA PSADSSAVTD AGAQREQQSA QRKARRCWSP ELHRRFVAAL QRLGGPQVAT PKQIREMMKV DGLTNDEVKS HLQKYRLHTR RASDGDQQQS
301: ASAGQWPRPE QYTTSQHSSS QSGSPQGPLQ LTVSSRGMSV TVGDSCDGGE ENEEEDGKSA SYSWEMQQNG TKASLSS
101: PDQLLAPAPS PSPAPPEKRK AEVVKTEADA SDKRSWMSSA QLWTCGSHSS TSNSNGDSVK KHAQKVSNAF MPLNGLPTLA KSSERPEAAA MAVPELSFSS
201: PAIDAPCPAA PSADSSAVTD AGAQREQQSA QRKARRCWSP ELHRRFVAAL QRLGGPQVAT PKQIREMMKV DGLTNDEVKS HLQKYRLHTR RASDGDQQQS
301: ASAGQWPRPE QYTTSQHSSS QSGSPQGPLQ LTVSSRGMSV TVGDSCDGGE ENEEEDGKSA SYSWEMQQNG TKASLSS
001: MGSLGDELSL GSIFGRGVSM NVVAVEKVDE HVKKLEEEKR KLESCQLELP LSLQILNDAI LYLKDKRCSE METQPLLKDF ISVNKPIQGE RGIELLKREE
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
Arabidopsis Description
HHO6Transcription factor HHO6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.