Factsheet for PGSC0003DMT400066352

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108300.2.1	Tomato	nucleus	96.27	95.56
VIT_03s0063g01060.t01	Wine grape	nucleus	60.2	60.35
KRH71185	Soybean	nucleus	55.97	54.35
KRH50234	Soybean	nucleus	54.48	53.16
KRH49770	Soybean	nucleus	47.26	51.77
KRG89233	Soybean	nucleus	47.01	51.36
CDY51048	Canola	nucleus	31.84	42.52
Bra018794.1-P	Field mustard	nucleus	31.84	42.38
PGSC0003DMT400026096	Potato	nucleus	38.31	42.19
GSMUA_Achr7P00660_001	Banana	nucleus	35.07	41.59
GSMUA_Achr4P28210_001	Banana	nucleus	32.34	40.37
GSMUA_Achr10P...	Banana	nucleus	38.81	40.21
CDY71327	Canola	nucleus	33.08	39.82
Zm00001d034160_P001	Maize	nucleus	32.84	39.05
Bra040662.1-P	Field mustard	nucleus	31.34	38.65
Os07t0119300-01	Rice	nucleus	34.08	38.59
AT1G49560.1	Thale cress	nucleus	31.84	38.44
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	31.84	38.32
CDY59732	Canola	nucleus	24.38	38.28
TraesCS2A01G264800.1	Wheat	nucleus	33.58	38.03
Zm00001d007962_P001	Maize	extracellular, nucleus	32.59	37.97
GSMUA_Achr6P34680_001	Banana	nucleus	35.57	37.73
KXG37487	Sorghum	nucleus	31.84	37.43
TraesCS5A01G401600.1	Wheat	nucleus	31.09	37.43
GSMUA_Achr4P23210_001	Banana	nucleus	34.58	37.37
TraesCS2D01G259200.2	Wheat	nucleus	33.08	37.36
GSMUA_Achr9P26570_001	Banana	nucleus	36.32	37.24
TraesCS5B01G406300.2	Wheat	nucleus	30.85	37.13
GSMUA_Achr10P...	Banana	nucleus	35.82	36.83
Zm00001d013202_P001	Maize	nucleus	33.08	36.74
TraesCS5D01G081000.1	Wheat	nucleus	34.08	36.53
GSMUA_Achr6P00650_001	Banana	nucleus	34.33	36.41
TraesCS5B01G075300.1	Wheat	nucleus	34.08	36.34
HORVU5Hr1G018220.2	Barley	nucleus	34.08	36.24
TraesCS5A01G068900.2	Wheat	nucleus	34.08	36.24
Os03t0764600-01	Rice	nucleus	31.34	36.21
GSMUA_Achr2P13380_001	Banana	nucleus	32.59	35.79
Zm00001d030891_P001	Maize	nucleus	32.59	35.79
Zm00001d018698_P001	Maize	nucleus	32.84	35.77
Os12t0586300-00	Rice	extracellular	34.83	35.44
EER95793	Sorghum	nucleus	34.08	34.86
Os03t0241001-00	Rice	plastid	12.44	34.72
HORVU2Hr1G006350.1	Barley	plastid	11.44	34.33
TraesCS2B01G277300.1	Wheat	nucleus	33.58	33.58
HORVU6Hr1G034270.1	Barley	plastid	11.19	33.58
OQU79454	Sorghum	nucleus	33.58	33.17
GSMUA_Achr4P32500_001	Banana	nucleus	27.61	32.65
PGSC0003DMT400002162	Potato	nucleus	30.1	32.18
HORVU2Hr1G062670.3	Barley	plastid	33.83	31.41
PGSC0003DMT400078136	Potato	nucleus	34.58	31.24
TraesCS5D01G411800.1	Wheat	plastid	30.6	31.22
HORVU5Hr1G097560.4	Barley	nucleus, plastid	27.61	24.34
CDY29342	Canola	cytosol, mitochondrion, nucleus	12.19	24.26
HORVU4Hr1G032990.1	Barley	cytosol	2.74	17.46

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102600464	MapMan:15.5.2.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1CFF3	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400025801	PGSC:PGSC0003DMG400025801	EnsemblPlants:PGSC0003DMT400066352	PFscan:PS51294	PANTHER:PTHR31003
PANTHER:PTHR31003:SF7	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000296E0FD	RefSeq:XP_006346440.1
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025801]

Coordinates

chr1:+:84725985..84728487

Molecular Weight (calculated)

44717.6 Da

IEP (calculated)

8.215

GRAVY (calculated)

-0.765

Length

402 amino acids

Sequence
(BLAST)

001: MGSIPAELSL DCRPSFIPKS ITDFLRQLSL IRNVPDKLSQ IDDYITRLED EMRKIDAFKR ELPLSVLLVK DAIVALREES MQYRKSRTEP VLEEFIPLKK
101: SSHEDTKAEI TKDKDSREKM SWMSSVQLWN SENTDEVINK QPSKSELKVD TQRSPEEGNS SVTEDPFQSC KTMNVGKAFS VPFKGYSGFS VTAVRKDNKD
201: ELPGLSLHTP GITKLREDTV TSGLNSKYNG SRGGLSSVAG CQSNIRTGSL AQQQSSRKQR RCWSPELHRR FVDALQQLGG SQVATPKQIR DLMQVDGLTN
301: DEVKSHLQKY RLHTRRVPNS QTQPANQSGV ALGNLWMSQG QYGEPSKQSS SQSGSPQGPL HLAGSCGGTS TTVGDSMEEE DDVKSENHSW KNHVLTSGKI
401: DV

Best Arabidopsis Sequence Match ( AT2G03500.1 )
(BLAST)

001: MASSSELSLD CKPQSYSMLL KSFGDNFQSD PTTHKLEDLL SRLEQERLKI DAFKRELPLC MQLLNNAVEV YKQQLEAYRA NSNNNNQSVG TRPVLEEFIP
101: LRNQPEKTNN KGSNWMTTAQ LWSQSETKPK NIDSTTDQSL PKDEINSSPK LGHFDAKQRN GSGAFLPFSK EQSLPELALS TEVKRVSPTN EHTNGQDGND
201: ESMINNDNNY NNNNNNNSNS NGVSSTTSQS NRKARRCWSP DLHRRFVQAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPSPQTSG
301: GPGPHLVVLG GIWVPPEYTS AHGGTPTLYH HQVHHHHTNT AGPPPPHFCS SQEFYTTPPP PQPLHHHHFQ TFNGSSGGTA STDSTHHQVT DSPTVEGKSP
401: ESGGGERKGL AALREECEDH SNINGSEITL KF

Arabidopsis Description

EFMMyb family transcription factor EFM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ85]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.