Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G081000.1 | Wheat | nucleus | 95.77 | 96.53 |
| TraesCS5B01G075300.1 | Wheat | nucleus | 95.5 | 95.76 |
| HORVU5Hr1G018220.2 | Barley | nucleus | 94.18 | 94.18 |
| HORVU4Hr1G032990.1 | Barley | cytosol | 14.55 | 87.3 |
| HORVU6Hr1G034270.1 | Barley | plastid | 26.98 | 76.12 |
| HORVU2Hr1G006350.1 | Barley | plastid | 26.72 | 75.37 |
| Os12t0586300-00 | Rice | extracellular | 70.11 | 67.09 |
| Zm00001d030891_P001 | Maize | nucleus | 62.96 | 65.03 |
| OQU79454 | Sorghum | nucleus | 67.46 | 62.65 |
| Os03t0241001-00 | Rice | plastid | 21.96 | 57.64 |
| GSMUA_Achr7P00660_001 | Banana | nucleus | 40.21 | 44.84 |
| GSMUA_Achr4P23210_001 | Banana | nucleus | 43.12 | 43.82 |
| GSMUA_Achr10P... | Banana | nucleus | 43.39 | 42.27 |
| GSMUA_Achr4P28210_001 | Banana | nucleus | 35.19 | 41.3 |
| GSMUA_Achr6P34680_001 | Banana | nucleus | 41.27 | 41.16 |
| GSMUA_Achr9P09630_001 | Banana | mitochondrion, nucleus | 35.71 | 40.42 |
| GSMUA_Achr9P26570_001 | Banana | nucleus | 41.53 | 40.05 |
| GSMUA_Achr10P... | Banana | nucleus | 41.27 | 39.9 |
| TraesCS2A01G264800.1 | Wheat | nucleus | 36.51 | 38.87 |
| GSMUA_Achr2P13380_001 | Banana | nucleus | 37.57 | 38.8 |
| TraesCS5A01G401600.1 | Wheat | nucleus | 34.13 | 38.62 |
| GSMUA_Achr6P00650_001 | Banana | nucleus | 38.1 | 37.99 |
| CDY40421 | Canola | nucleus | 16.14 | 37.42 |
| GSMUA_Achr4P32500_001 | Banana | nucleus | 32.8 | 36.47 |
| CDY72117 | Canola | nucleus | 16.93 | 34.97 |
| CDY42715 | Canola | nucleus | 26.98 | 34.69 |
| PGSC0003DMT400026096 | Potato | nucleus | 33.33 | 34.52 |
| Solyc02g090400.2.1 | Tomato | nucleus | 33.86 | 34.5 |
| CDY51048 | Canola | nucleus | 27.25 | 34.22 |
| VIT_03s0063g01060.t01 | Wine grape | nucleus | 36.24 | 34.16 |
| CDX69259 | Canola | nucleus | 29.1 | 34.16 |
| Bra018794.1-P | Field mustard | nucleus | 27.25 | 34.11 |
| PGSC0003DMT400066352 | Potato | nucleus | 36.24 | 34.08 |
| Bra017795.1-P | Field mustard | nucleus | 26.45 | 34.01 |
| KRH50234 | Soybean | nucleus | 37.04 | 33.98 |
| KRH28514 | Soybean | nucleus | 30.69 | 33.92 |
| Solyc01g108300.2.1 | Tomato | nucleus | 36.24 | 33.83 |
| VIT_07s0197g00060.t01 | Wine grape | nucleus | 34.39 | 33.68 |
| KRH71185 | Soybean | nucleus | 36.77 | 33.57 |
| Bra010581.1-P | Field mustard | nucleus | 27.51 | 33.33 |
| CDY44057 | Canola | nucleus | 28.31 | 33.33 |
| KRG89233 | Soybean | nucleus | 32.28 | 33.15 |
| KRH49770 | Soybean | nucleus | 32.01 | 32.97 |
| CDX75610 | Canola | nucleus | 28.31 | 32.92 |
| Bra011720.1-P | Field mustard | nucleus | 28.31 | 32.92 |
| Bra040662.1-P | Field mustard | nucleus | 28.31 | 32.82 |
| CDY59732 | Canola | nucleus | 21.96 | 32.42 |
| CDY71327 | Canola | nucleus | 28.31 | 32.04 |
| AT4G37180.2 | Thale cress | nucleus | 30.42 | 31.68 |
| KRH76947 | Soybean | nucleus | 30.69 | 31.61 |
| AT1G49560.1 | Thale cress | nucleus | 27.78 | 31.53 |
| CDX69206 | Canola | nucleus | 12.96 | 31.41 |
| KRH04674 | Soybean | nucleus | 29.89 | 30.96 |
| CDY22459 | Canola | nucleus | 26.72 | 24.82 |
| TraesCS3A01G123700.1 | Wheat | nucleus | 29.63 | 23.73 |
| TraesCS2A01G116100.2 | Wheat | plastid | 25.4 | 20.21 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 10.32 | 19.31 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G068900.2 | EnsemblPlantsGene:TraesCS5A01G068900 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF2 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | MapMan:15.5.2.3 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:77325461..77327530
Molecular Weight (calculated)
40336.0 Da
IEP (calculated)
8.496
GRAVY (calculated)
-0.686
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSAVHKEA VVLGGGGGAG EDHRLRALAA RTVTDSLRAA VARSSSAEKA ARLEECARSL EAEKAKMEVF RRELPISVHL IADVIEWLKD EVAQHRRPAP
101: DQLLAPVPLP SPSPAPLAKR KAEGVKTEAD ASDKRSWMSS AQLWTCGSHS STSNSNGDSV KKHAQKVSNA FMPLNGLPTF AKSSERPEAA AMAVPELSLS
201: PPAIDAPCPA APSADSSAVT DAGAQREQQS AQRKARRCWS PELHRRFVAA LQRLGGPQVA TPKQIREMMK VDGLTNDEVK SHLQKYRLHT RRASDGEQQQ
301: SASAGQWPRP EQYTTSQHSS SQSGSPQGPL QLTVSSRGMS VTAGDSCDGG EENEEEDGKS ASYSWGMQQN GTKASSSS
101: DQLLAPVPLP SPSPAPLAKR KAEGVKTEAD ASDKRSWMSS AQLWTCGSHS STSNSNGDSV KKHAQKVSNA FMPLNGLPTF AKSSERPEAA AMAVPELSLS
201: PPAIDAPCPA APSADSSAVT DAGAQREQQS AQRKARRCWS PELHRRFVAA LQRLGGPQVA TPKQIREMMK VDGLTNDEVK SHLQKYRLHT RRASDGEQQQ
301: SASAGQWPRP EQYTTSQHSS SQSGSPQGPL QLTVSSRGMS VTAGDSCDGG EENEEEDGKS ASYSWGMQQN GTKASSSS
001: MGSLGDELSL GSIFGRGVSM NVVAVEKVDE HVKKLEEEKR KLESCQLELP LSLQILNDAI LYLKDKRCSE METQPLLKDF ISVNKPIQGE RGIELLKREE
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
101: LMREKKFQQW KANDDHTSKI KSKLEIKRNE EKSPMLLIPK VETGLGLGLS SSSIRRKGIV ASCGFTSNSM PQPPTPAVPQ QPAFLKQQAL RKQRRCWNPE
201: LHRRFVDALQ QLGGPGVATP KQIREHMQEE GLTNDEVKSH LQKYRLHIRK PNSNAEKQSA VVLGFNLWNS SAQDEEETCE GGESLKRSNA QSDSPQGPLQ
301: LPSTTTTTGG DSSMEDVEDA KSESFQLERL RSP
Arabidopsis Description
HHO6Transcription factor HHO6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.