Factsheet for Bra011720.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75610	Canola	nucleus	98.15	98.15
Bra010581.1-P	Field mustard	nucleus	74.15	77.24
Bra017795.1-P	Field mustard	nucleus	65.23	72.11
AT4G37180.2	Thale cress	nucleus	77.23	69.15
GSMUA_Achr7P00660_001	Banana	nucleus	36.92	35.4
VIT_07s0197g00060.t01	Wine grape	nucleus	41.54	34.97
Solyc02g090400.2.1	Tomato	nucleus	39.08	34.23
PGSC0003DMT400026096	Potato	nucleus	38.15	33.97
KRH28514	Soybean	nucleus	35.69	33.92
GSMUA_Achr9P09630_001	Banana	mitochondrion, nucleus	34.77	33.83
Zm00001d034160_P001	Maize	nucleus	35.08	33.73
GSMUA_Achr4P28210_001	Banana	nucleus	33.23	33.54
TraesCS5A01G401600.1	Wheat	nucleus	34.15	33.23
KXG37487	Sorghum	nucleus	34.77	33.04
TraesCS5B01G406300.2	Wheat	nucleus	33.85	32.93
KRH76947	Soybean	nucleus	36.31	32.15
GSMUA_Achr4P23210_001	Banana	nucleus	36.62	31.99
GSMUA_Achr6P34680_001	Banana	nucleus	37.23	31.93
GSMUA_Achr9P26570_001	Banana	nucleus	38.46	31.89
Os03t0764600-01	Rice	nucleus	33.54	31.32
Bra018794.1-P	Field mustard	nucleus	28.92	31.13
GSMUA_Achr10P...	Banana	nucleus	37.23	30.95
Zm00001d007962_P001	Maize	extracellular, nucleus	32.62	30.72
Os07t0119300-01	Rice	nucleus	33.54	30.7
Zm00001d013202_P001	Maize	nucleus	34.15	30.66
GSMUA_Achr10P...	Banana	nucleus	36.31	30.41
Bra040662.1-P	Field mustard	nucleus	30.15	30.06
KRH04674	Soybean	nucleus	33.54	29.86
TraesCS2A01G264800.1	Wheat	nucleus	32.0	29.3
GSMUA_Achr2P13380_001	Banana	nucleus	32.92	29.23
GSMUA_Achr4P32500_001	Banana	nucleus	30.46	29.12
TraesCS5D01G081000.1	Wheat	nucleus	33.23	28.8
Zm00001d018698_P001	Maize	nucleus	32.62	28.73
TraesCS2D01G259200.2	Wheat	nucleus	31.38	28.65
HORVU5Hr1G018220.2	Barley	nucleus	33.23	28.57
Os03t0241001-00	Rice	plastid	12.62	28.47
TraesCS5D01G411800.1	Wheat	plastid	34.46	28.43
TraesCS5B01G075300.1	Wheat	nucleus	32.92	28.38
TraesCS5A01G068900.2	Wheat	nucleus	32.92	28.31
HORVU2Hr1G006350.1	Barley	plastid	11.38	27.61
GSMUA_Achr6P00650_001	Banana	nucleus	32.0	27.44
EER95793	Sorghum	nucleus	32.92	27.23
HORVU6Hr1G034270.1	Barley	plastid	11.08	26.87
Bra004330.1-P	Field mustard	nucleus	29.54	26.74
Bra016734.1-P	Field mustard	nucleus	28.31	26.59
Bra012471.1-P	Field mustard	nucleus	26.77	26.44
Bra017349.1-P	Field mustard	nucleus	28.92	26.26
Zm00001d030891_P001	Maize	nucleus	29.23	25.96
TraesCS2B01G277300.1	Wheat	nucleus	32.0	25.87
Os12t0586300-00	Rice	extracellular	31.38	25.82
Bra025115.1-P	Field mustard	nucleus	33.54	25.77
Bra038360.1-P	Field mustard	nucleus	28.92	25.54
Bra025161.1-P	Field mustard	nucleus	29.54	25.4
Bra026548.1-P	Field mustard	nucleus	32.92	25.36
Bra019824.1-P	Field mustard	nucleus	27.69	24.66
OQU79454	Sorghum	nucleus	30.46	24.32
HORVU2Hr1G062670.3	Barley	plastid	31.38	23.56
HORVU5Hr1G097560.4	Barley	nucleus, plastid	28.92	20.61
HORVU4Hr1G032990.1	Barley	cytosol	2.77	14.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra011720	EnsemblPlants:Bra011720.1	EnsemblPlants:Bra011720.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010629	GO:GO:0044212	GO:GO:0048449
GO:GO:0090701	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4D5G3	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF2	InterPro:SANT/Myb	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI00025467EF	SEG:seg	:	:	:

Description

AT4G37180 (E=9e-057) | myb family transcription factor

Coordinates

chrA01:+:886704..888010

Molecular Weight (calculated)

36969.7 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.849

Length

325 amino acids

Sequence
(BLAST)

001: MVQTDSDKMG LNLNLSMYSL AKPLSQFLDE VSRIKDYDSK LSEIDGYVGK LEEERRKIDV FKRELPLCML LLNEAIETLK EEASSSVMMA SDGKLDVGEG
101: AKVESDNKKN WMSSAQLWIS NPNSQLQSTN EKEDRSVTHK PNQGWAFTPF NLPPPPPPLT LRTPPSEILM DYNHQFNKPM QSLHSQKKEQ RRRWSQDLHR
201: KFVDALHSLG GSQVATPKQI RDMMKVDGLT NDEVKSHLQK YRMHIRKHPL HPAAKTLSSS DQAVLLDKET QSLISLTRSD SPQSPLVDGC LFNNNGHSSE
301: DEEKSDGRSW KSESNKKRQA LDLEL

Best Arabidopsis Sequence Match ( AT4G37180.1 )
(BLAST)

001: MVQTETDQRM GLNLNLSIYS LPKPLSQFLD EVSRIKDNHS KLSEIDGYVG KLEEERNKID VFKRELPLCM LLLNEAIGAL KDEARKGLSL MASNGKFDDV
101: ERAKPETDKK SWMSSAQLWI SNPNSQFRST NEEEEDRCVS QNPFQTCNYP NQGGVFMPFN RPPPPPPPAP LSLMTPTSEM MMDYSRIEQS HHHHQFNKPS
201: SQSHHIQKKE QRRRWSQELH RKFVDALHRL GGPQVATPKQ IRDLMKVDGL TNDEVKSHLQ KYRMHIRKHP LHPTKTLSSS DQPGVLERES QSLISLSRSD
301: SPQSPLVARG LFSSNVGHSS EEDEEEEDEE EEKSDGRSSC RNDETKKKRQ VLDLEL

Arabidopsis Description

HHO5Transcription factor HHO5 [Source:UniProtKB/Swiss-Prot;Acc:F4JRB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.