Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19382 | Canola | nucleus | 95.65 | 97.06 |
| Bra019824.1-P | Field mustard | nucleus | 94.78 | 89.59 |
| CDY50179 | Canola | nucleus | 82.03 | 81.79 |
| CDY16075 | Canola | nucleus | 82.03 | 81.09 |
| CDY21091 | Canola | nucleus | 80.87 | 80.64 |
| CDY04180 | Canola | nucleus | 57.68 | 59.05 |
| CDY13584 | Canola | nucleus | 60.87 | 58.82 |
| CDX83554 | Canola | nucleus | 59.71 | 58.19 |
| CDY39188 | Canola | nucleus | 57.97 | 57.47 |
| VIT_01s0011g03110.t01 | Wine grape | nucleus | 48.7 | 47.19 |
| CDX81535 | Canola | nucleus | 43.77 | 44.02 |
| CDY51129 | Canola | nucleus | 40.58 | 43.75 |
| CDY20522 | Canola | nucleus | 41.74 | 43.64 |
| PGSC0003DMT400002162 | Potato | nucleus | 46.09 | 42.29 |
| CDX95998 | Canola | nucleus | 43.77 | 42.06 |
| CDY54503 | Canola | nucleus | 44.06 | 41.3 |
| CDY38609 | Canola | nucleus | 42.9 | 41.0 |
| Solyc05g009720.2.1 | Tomato | nucleus | 47.25 | 40.75 |
| GSMUA_Achr1P23220_001 | Banana | nucleus | 28.7 | 37.36 |
| GSMUA_Achr10P... | Banana | nucleus | 32.75 | 36.45 |
| GSMUA_Achr8P18270_001 | Banana | nucleus | 38.55 | 35.85 |
| GSMUA_Achr6P09870_001 | Banana | nucleus | 35.07 | 35.59 |
| GSMUA_Achr11P... | Banana | nucleus | 37.97 | 35.5 |
| GSMUA_Achr3P21090_001 | Banana | nucleus | 36.52 | 33.78 |
| CDY40421 | Canola | nucleus | 15.07 | 31.9 |
| Os02t0325600-01 | Rice | nucleus | 37.97 | 31.8 |
| CDY59732 | Canola | nucleus | 23.48 | 31.64 |
| TraesCS2D01G119100.1 | Wheat | nucleus | 36.52 | 31.34 |
| GSMUA_Achr4P03680_001 | Banana | nucleus | 26.96 | 30.19 |
| CDY72117 | Canola | nucleus | 15.65 | 29.51 |
| CDX69259 | Canola | nucleus | 27.54 | 29.5 |
| CDY44057 | Canola | nucleus | 27.25 | 29.28 |
| CDX75610 | Canola | nucleus | 27.25 | 28.92 |
| CDY42715 | Canola | nucleus | 24.35 | 28.57 |
| EES15678 | Sorghum | nucleus | 37.97 | 28.36 |
| TraesCS2B01G135600.1 | Wheat | nucleus | 28.7 | 28.29 |
| CDY51048 | Canola | nucleus | 24.64 | 28.24 |
| Zm00001d023411_P001 | Maize | nucleus | 36.81 | 28.04 |
| Zm00001d023402_P001 | Maize | nucleus | 36.52 | 27.45 |
| GSMUA_Achr4P13650_001 | Banana | plastid | 12.46 | 26.06 |
| CDY70722 | Canola | nucleus | 23.19 | 26.06 |
| CDY71327 | Canola | nucleus | 24.93 | 25.75 |
| TraesCS2A01G116100.2 | Wheat | plastid | 35.36 | 25.68 |
| CDY51214 | Canola | nucleus | 30.43 | 24.82 |
| CDY02988 | Canola | nucleus | 30.43 | 24.82 |
| HORVU2Hr1G020140.3 | Barley | nucleus, plastid | 36.52 | 24.37 |
| CDX69206 | Canola | nucleus | 11.01 | 24.36 |
| CDY71874 | Canola | nucleus | 25.22 | 24.1 |
| CDY22459 | Canola | nucleus | 26.67 | 22.6 |
| CDY29342 | Canola | cytosol, mitochondrion, nucleus | 10.43 | 17.82 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078EF55 | EnsemblPlants:CDX97993 | ProteinID:CDX97993 | ProteinID:CDX97993.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00105351001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31003 | PANTHER:PTHR31003:SF16 |
| InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EDD5F4 | SEG:seg | : |
Description
BnaA06g07440D
Coordinates
chrLK031902:-:422429..424121
Molecular Weight (calculated)
39425.9 Da
IEP (calculated)
5.674
GRAVY (calculated)
-0.959
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKKIRNMDY NQEECGQYIK ALEEERRKIL VFQRELPLCL DLVTQAIERC KKEITETATD NVYGQSECSE QTTGQCTPVL EQFLTIKDSS TFNEEEVEEE
101: FEDEQGNHDP ENDSEDNNMK SDWLKSVQLW NQPDPLLPKE EQSQQMMETV VKRDESMRED AMANSGERRR RETERKQRRC WSSQLHRRFL NALQHLGGPH
201: VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPSQTVP NNGNSQKQHF VVVGGLWVPQ SDYSTGKTTG RATTSGTTTT TTTTTTTGIY GAMAAPPPPQ
301: WPSHFNFTPS IIVEEGSGSH SDEVVVRCSS PAMSSSTRNY YVTKN
101: FEDEQGNHDP ENDSEDNNMK SDWLKSVQLW NQPDPLLPKE EQSQQMMETV VKRDESMRED AMANSGERRR RETERKQRRC WSSQLHRRFL NALQHLGGPH
201: VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPSQTVP NNGNSQKQHF VVVGGLWVPQ SDYSTGKTTG RATTSGTTTT TTTTTTTGIY GAMAAPPPPQ
301: WPSHFNFTPS IIVEEGSGSH SDEVVVRCSS PAMSSSTRNY YVTKN
001: MIKKFSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPEMT TENMYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE
101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH
201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW
301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN
101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH
201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW
301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN
Arabidopsis Description
HRS1Transcription factor HRS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX67]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.