Factsheet for Zm00001d023402_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d005520_P001
Zm00001d011093_P001
Zm00001d013780_P001
Zm00001d018409_P007
Zm00001d019980_P001
Zm00001d023560_P002
Zm00001d033099_P001
Zm00001d037481_P003
Zm00001d045163_P001
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25550.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT1G25550.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT1G25550.1	Zm00001d053016_P002	AT1G35670.1	19130088
AT1G68670.1	Zm00001d011093_P001	AT1G22630.1	21798944
AT1G68670.1	Zm00001d013780_P001	AT2G04630.1	21798944
AT1G68670.1	Zm00001d033099_P001	AT2G04630.1	21798944
AT1G68670.1	Zm00001d018409_P007	AT3G05530.1	21798944
AT1G68670.1	Zm00001d037481_P003	AT3G05530.1	21798944
AT1G68670.1	Zm00001d045163_P001	AT3G05530.1	21798944
AT1G68670.1	Zm00001d005520_P001	AT3G52155.1	21798944
AT1G68670.1	Zm00001d019980_P001	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023411_P001	Maize	nucleus	94.34	95.58
EES15678	Sorghum	nucleus	81.48	80.95
Os02t0325600-01	Rice	nucleus	58.17	64.81
TraesCS2D01G119100.1	Wheat	nucleus	54.68	62.44
TraesCS2B01G135600.1	Wheat	nucleus	45.53	59.71
TraesCS2A01G116100.2	Wheat	plastid	54.47	52.63
GSMUA_Achr6P09870_001	Banana	nucleus	37.04	50.0
VIT_01s0011g03110.t01	Wine grape	nucleus	37.91	48.88
HORVU2Hr1G020140.3	Barley	nucleus, plastid	54.9	48.74
GSMUA_Achr11P...	Banana	nucleus	38.56	47.97
GSMUA_Achr8P18270_001	Banana	nucleus	38.34	47.44
GSMUA_Achr3P21090_001	Banana	nucleus	37.47	46.11
GSMUA_Achr10P...	Banana	nucleus	30.94	45.81
AT1G25550.1	Thale cress	nucleus	33.99	45.35
PGSC0003DMT400002162	Potato	nucleus	35.51	43.35
CDY51129	Canola	nucleus	29.85	42.81
CDY20522	Canola	nucleus	29.85	41.52
Solyc05g009720.2.1	Tomato	nucleus	35.95	41.25
AT1G68670.1	Thale cress	nucleus	31.81	41.24
KRG92028	Soybean	nucleus	34.2	41.21
KRH34759	Soybean	nucleus	33.99	40.73
CDX95998	Canola	nucleus	31.81	40.67
Bra004330.1-P	Field mustard	nucleus	31.59	40.39
KRH75476	Soybean	nucleus	33.33	40.37
CDY38609	Canola	nucleus	31.59	40.17
CDX81535	Canola	nucleus	29.63	39.65
KRH70595	Soybean	nucleus	32.03	39.62
CDY54503	Canola	nucleus	31.37	39.13
Bra038360.1-P	Field mustard	nucleus	31.15	38.86
Bra012471.1-P	Field mustard	nucleus	27.67	38.6
CDY04180	Canola	nucleus	27.67	37.69
AT1G13300.1	Thale cress	nucleus	28.1	37.5
CDX83554	Canola	nucleus	28.76	37.29
CDY16075	Canola	nucleus	28.32	37.25
CDY19382	Canola	nucleus	27.45	37.06
CDY13584	Canola	nucleus	28.54	36.69
CDX97993	Canola	nucleus	27.45	36.52
CDY39188	Canola	nucleus	27.23	35.92
CDY50179	Canola	nucleus	27.02	35.84
CDY21091	Canola	nucleus	27.02	35.84
Bra016734.1-P	Field mustard	nucleus	27.02	35.84
Bra017349.1-P	Field mustard	nucleus	27.89	35.75
Bra025161.1-P	Field mustard	nucleus	29.41	35.71
AT3G25790.1	Thale cress	nucleus	27.23	35.01
Bra019824.1-P	Field mustard	nucleus	27.45	34.52
Zm00001d007962_P001	Maize	extracellular, nucleus	22.44	29.86
Zm00001d034160_P001	Maize	nucleus	21.13	28.7
Zm00001d030891_P001	Maize	nucleus	22.0	27.6
Zm00001d018698_P001	Maize	nucleus	22.0	27.37
Zm00001d013202_P001	Maize	nucleus	21.13	26.8
Zm00001d039637_P001	Maize	nucleus	28.76	24.63

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	ProteinID:AQK39273.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7TM84	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31003	PANTHER:PTHR31003:SF16	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI000221671E	EnsemblPlantsGene:Zm00001d023402	EnsemblPlants:Zm00001d023402_P001	EnsemblPlants:Zm00001d023402_T001	SEG:seg	:

Description

G2-like-transcription factor 4Putative MYB DNA-binding domain superfamily protein

Coordinates

chr10:-:4740647..4742679

Molecular Weight (calculated)

49341.5 Da

IEP (calculated)

7.061

GRAVY (calculated)

-0.676

Length

459 amino acids

Sequence
(BLAST)

001: MEMDPPPPPP LHADRRRRFR DYLLALEEER RKIQVFQREL PLCLDLVTQT IEGMRSHMDS VVVGSEETVS DHGGPVLEEF MPLKPTTLSS SSSQPHYQDE
101: HDSAHYLEHR RGSAATANDV VDADKDGEAV GDLETAAASS SRPLPHPETK KAMPDWLQSV QLWSNQQQPS ASPPQHQDEL LLPCRPVALN ACRKPGGAFQ
201: PFEKEKKKKD KEEKQRAELE LPLPAAASSA VVGDSCDRAG ATDTDTDTAE NNKASSNKGG NDKEAQLSSQ SQAPSRKARR CWAPELHRRF LQALQQLGGS
301: HVATPKQIRE LMNVDGLTND EVKSHLQKYR LHTRRPNSAA AAVQSGGTSV VAPPAAPQFV VVGGIWVPPP EYAAAVAVAA AAAAQPQQVH LAGDASGTTT
401: TAADKVYAPV ATTLTPAPRP RPRPRPERQS SSCSGARRSG DACSGSPAVL SSSSHTASA

Best Arabidopsis Sequence Match ( AT1G25550.1 )
(BLAST)

001: MMMFKSGDMD YTQKMKRCHE YVEALEEEQK KIQVFQRELP LCLELVTQAI ESCRKELSES SEHVGGQSEC SERTTSECGG AVFEEFMPIK WSSASSDETD
101: KDEEAEKTEM MTNENNDGDK KKSDWLRSVQ LWNQSPDPQP NNKKPMVIEV KRSAGAFQPF QKEKPKAADS QPLIKAITPT STTTTSSTAE TVGGGKEFEE
201: QKQSHSNRKQ RRCWSPELHR RFLHALQQLG GSHVATPKQI RDLMKVDGLT NDEVKSHLQK YRLHTRRPAT PVVRTGGENP QQRQFMVMEG IWVPSHDTTN
301: NRVYAPVATQ PPQSSTSGER SNRGCKSPAT SSTTTHTPHL LPLS

Arabidopsis Description

HHO3Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.