Factsheet for Zm00001d037481_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014514_P001
Zm00001d014833_P001
Zm00001d017985_P001
Zm00001d020426_P001
Zm00001d032224_P001
Zm00001d044748_P002
Zm00001d050383_P001
Zm00001d052289_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05530.1	Zm00001d014514_P001	AT1G59900.1	24846764
AT3G05530.1	Zm00001d014833_P001	AT1G59900.1	24846764
AT3G05530.1	Zm00001d017985_P001	AT1G59900.1	24846764
AT3G05530.1	Zm00001d044748_P002	AT1G59900.1	24846764
AT3G05530.1	Zm00001d052289_P001	AT1G59900.1	24846764
AT3G05530.1	Zm00001d020426_P001	AT3G25860.1	24846764
AT3G05530.1	Zm00001d032224_P001	AT3G25860.1	24846764
AT3G05530.1	Zm00001d050383_P001	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87942	Sorghum	cytosol	99.77	99.77
GSMUA_Achr5P04520_001	Banana	cytosol	90.93	96.54
VIT_14s0060g02260.t01	Wine grape	cytosol	90.23	95.8
VIT_05s0020g01180.t01	Wine grape	cytosol	93.95	95.51
Zm00001d045163_P001	Maize	mitochondrion	39.07	95.45
KRG92899	Soybean	cytosol, nucleus	93.26	94.8
KRH33891	Soybean	endoplasmic reticulum, nucleus	93.02	94.56
Solyc01g099760.2.1	Tomato	nucleus, plastid	92.56	94.09
PGSC0003DMT400063574	Potato	cytosol	92.56	94.09
Bra001152.1-P	Field mustard	cytosol	92.09	93.4
CDX74142	Canola	cytosol	92.09	93.4
CDY40714	Canola	cytosol	92.09	93.4
CDY27761	Canola	cytosol	91.86	93.16
CDY05176	Canola	cytosol	91.86	93.16
Bra039431.1-P	Field mustard	cytosol	91.86	93.16
AT3G05530.1	Thale cress	cytosol	91.86	93.16
CDY18801	Canola	cytosol	91.63	92.92
CDY18782	Canola	cytosol	91.63	92.92
Bra040214.1-P	Field mustard	cytosol	91.63	92.92
Zm00001d018409_P007	Maize	cytosol	95.35	91.52
KRH68501	Soybean	nucleus	87.91	88.94
KRG96790	Soybean	mitochondrion	64.65	83.73
Zm00001d028801_P001	Maize	cytosol, extracellular	42.09	40.58
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	42.09	40.49
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	39.07	39.81
Zm00001d053616_P002	Maize	cytosol	39.07	39.81
Zm00001d015788_P001	Maize	plasma membrane	36.98	39.75
Zm00001d053649_P002	Maize	cytosol, mitochondrion	36.98	39.75
Zm00001d046539_P002	Maize	cytosol, mitochondrion	36.74	39.7
Zm00001d018309_P003	Maize	cytosol	39.3	39.67
Zm00001d007215_P001	Maize	cytosol	42.09	39.01
Zm00001d050616_P002	Maize	plastid	37.67	37.33
Zm00001d052078_P003	Maize	cytosol	39.3	36.98
Zm00001d032117_P001	Maize	cytosol	19.53	26.25
Zm00001d015886_P002	Maize	cytosol	30.7	24.35
Zm00001d025776_P002	Maize	cytosol	28.6	21.65
Zm00001d009592_P001	Maize	cytosol	11.86	19.47
Zm00001d050303_P001	Maize	cytosol	29.53	16.08
Zm00001d048409_P001	Maize	cytosol	29.53	15.8
Zm00001d027707_P001	Maize	cytosol, plasma membrane	29.3	15.61
Zm00001d014124_P001	Maize	cytosol, plasma membrane	29.3	15.54
Zm00001d032859_P006	Maize	plasma membrane	29.07	15.43
Zm00001d035913_P002	Maize	cytosol, mitochondrion	25.81	15.14
Zm00001d045566_P001	Maize	cytosol, mitochondrion	26.74	14.97
Zm00001d022096_P002	Maize	mitochondrion	26.28	14.93
Zm00001d049140_P006	Maize	cytosol, plastid	28.6	12.24
Zm00001d002462_P010	Maize	mitochondrion	25.58	10.35
Zm00001d053999_P001	Maize	cytosol	8.14	8.52
Zm00001d002717_P001	Maize	mitochondrion	7.91	8.33
Zm00001d049974_P004	Maize	peroxisome	20.93	8.07
Zm00001d027244_P001	Maize	cytosol	5.81	6.83
Zm00001d033491_P001	Maize	cytosol, plasma membrane, plastid	1.16	1.98

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100274559	MapMan:19.2.6.2.1.5	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	ProteinID:AQK84077.1	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	UniProt:B4FBJ7	EMBL:BT034485
EMBL:BT040935	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	GO:GO:0036402	GO:GO:1901800	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	InterPro:PSMC3	PANTHER:PTHR23073	PANTHER:PTHR23073:SF7	SMART:SM00382	SUPFAM:SSF52540
TIGRFAMs:TIGR01242	UniParc:UPI00017B68D7	EnsemblPlantsGene:Zm00001d037481	EnsemblPlants:Zm00001d037481_P003	EnsemblPlants:Zm00001d037481_T003	SEG:seg

Description

26S protease regulatory subunit 6A homolog A

Coordinates

chr6:+:126730484..126750885

Molecular Weight (calculated)

47813.2 Da

IEP (calculated)

4.680

GRAVY (calculated)

-0.400

Length

430 amino acids

Sequence
(BLAST)

001: MSSSGAPAPA AAMAVDDAED DQLASMSTED IIRASRLLDN EIRVLKDELQ RTNLELESFK EKIKENQEKI KLNKQLPYLV GNIVEILEMN PEDEAEEDGA
101: NIDLDSQRKG KCVVLKTSTR QTIFLPVVGL VDPDKLKPGD LVGVNKDSYL ILDTLPSEYD SRVKAMEVDE KPTEDYNDIG GLEKQIQELV EAIVLPMTHK
201: DRFQKLGIRP PKGVLLYGPP GTGKTLMARA CAAQTNATFL KLAGPQLVQM FIGDGAKLVR DAFQLAKEKA PCIIFIDEID AIGTKRFDSE VSGDREVQRT
301: MLELLNQLDG FSSDERIKVI AATNRADILD PALMRSGRLD RKIEFPHPSE EARARILQIH SRKMNVNPDV NFEELARSTD DFNGAQLKAV CVEAGMLALR
401: RDATEVTHED FNEGIVQVQA KKKSSLNYYA

Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Arabidopsis Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.