Factsheet for Zm00001d032224_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d023606_P005
Zm00001d039354_P001
Zm00001d041839_P001
Zm00001d049623_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT3G25860.1	Zm00001d041839_P001	AT1G34430.1	21798944
AT3G25860.1	Zm00001d049623_P002	AT1G79070.1	21798944
AT3G25860.1	Zm00001d039354_P001	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15031	Sorghum	plastid	95.12	94.32
Zm00001d050383_P001	Maize	plastid	94.06	84.87
Os08t0431300-01	Rice	plastid	84.71	84.0
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	83.23	82.7
TraesCS5A01G476700.1	Wheat	plastid	83.01	82.49
TraesCS5B01G489600.1	Wheat	golgi	83.01	82.32
GSMUA_Achr3P07350_001	Banana	cytosol	67.94	78.62
Zm00001d020426_P001	Maize	plastid	71.76	74.45
HORVU5Hr1G112850.3	Barley	plastid	81.1	71.27
Solyc05g009530.2.1	Tomato	plastid	67.3	69.06
VIT_01s0011g03380.t01	Wine grape	plastid	70.91	68.44
Zm00001d023606_P005	Maize	plastid	66.24	68.27
PGSC0003DMT400033754	Potato	plastid	66.45	68.04
KRH75381	Soybean	plastid	60.51	66.74
CDX83563	Canola	plastid	67.09	66.39
CDY13593	Canola	plastid	67.09	66.25
Bra025167.1-P	Field mustard	plastid	67.09	66.25
CDY39183	Canola	plastid	66.03	65.89
Bra017345.1-P	Field mustard	plastid	66.67	65.55
CDY04184	Canola	plastid	66.67	65.55
AT3G25860.1	Thale cress	plastid	66.67	65.42
KRG90801	Soybean	endoplasmic reticulum, nucleus	68.58	63.83
Zm00001d041839_P001	Maize	plastid	64.54	51.26
Zm00001d053580_P002	Maize	mitochondrion	30.36	25.95
Zm00001d034531_P001	Maize	mitochondrion	25.9	24.75
Zm00001d016365_P002	Maize	mitochondrion	31.0	23.66
Zm00001d040670_P004	Maize	mitochondrion	23.35	21.03
Zm00001d025258_P009	Maize	mitochondrion	18.9	19.96
Zm00001d003923_P002	Maize	mitochondrion	18.68	18.6

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
UniProt:A0A1D6KPB2	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089	InterPro:IPR004167
InterPro:IPR023213	InterPro:IPR036625	ProteinID:ONM04644.1	ProteinID:ONM04645.1	PFAM:PF00198	PFAM:PF00364
PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151
PANTHER:PTHR23151:SF67	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI00022161D7
EnsemblPlantsGene:Zm00001d032224	EnsemblPlants:Zm00001d032224_P001	EnsemblPlants:Zm00001d032224_T001	SEG:seg	:	:

Description

Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex chloroplastic

Coordinates

chr1:+:217877924..217882338

Molecular Weight (calculated)

48908.1 Da

IEP (calculated)

8.848

GRAVY (calculated)

0.093

Length

471 amino acids

Sequence
(BLAST)

001: MATAPASLSL SASTLPTRLR AAAVLAGMRW RQPQRGRMVV RAKIREIFMP ALSSTMTEGK IVSWSAGEGD RVSKGDAVVV VESDKADMDV ETFHDGIVAV
101: VLVQAGESAP VGAPIALLAE SEEEVPLALA KAQELSNGQP QQAPPAPTED AAATPPPPSA PATAPTPVAV GTKGIASPHA KKLAKQHRVD LAKVTGTGPY
201: GRITSADVEA AAGIQPKSKP APAAAAPPPV AAPSVGAVPQ SAVLPPVPGA TVVPFTTMQA AVSKNMVESL AVPAFRVGYP IITDKLDELY EKVKPKGVTM
301: TVLLAKAAAM ALAQHPVVNA SCRDGKSFTY NSNINIAVAV AIDGGLITPV LQDADKLDIY LLSQNWKDLV KKARAKQLQP NEYSSGTFTL SNLGMFGVDR
401: FDAILPPGQG AIMAVGASKP TVVADKDGFF SVKSKMLVNV TADHRIVYGA DLAAFLQTFA KVIEDPESLT L

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.