CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91819
KRH13655
KRH34962
KRH43808
KRH71066

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	KRG91819	AT1G34430.1	21798944
AT3G25860.1	KRH34962	AT1G34430.1	21798944
AT3G25860.1	KRH13655	AT1G79070.1	21798944
AT3G25860.1	KRH43808	AT1G79070.1	21798944
AT3G25860.1	KRH71066	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P07350_001	Banana	cytosol	64.87	68.06
Solyc05g009530.2.1	Tomato	plastid	72.13	67.1
PGSC0003DMT400033754	Potato	plastid	71.66	66.52
CDX83563	Canola	plastid	73.54	65.97
CDY13593	Canola	plastid	73.3	65.62
Bra025167.1-P	Field mustard	plastid	73.07	65.41
CDY39183	Canola	plastid	71.66	64.83
VIT_01s0011g03380.t01	Wine grape	plastid	74.0	64.75
Bra017345.1-P	Field mustard	plastid	72.37	64.51
KRG90801	Soybean	endoplasmic reticulum, nucleus	76.35	64.43
CDY04184	Canola	plastid	72.13	64.3
AT3G25860.1	Thale cress	plastid	71.66	63.75
Zm00001d032224_P001	Maize	plastid	66.74	60.51
TraesCS5B01G489600.1	Wheat	golgi	66.98	60.21
TraesCS5A01G476700.1	Wheat	plastid	66.74	60.13
EES15031	Sorghum	plastid	66.74	60.0
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	66.51	59.92
Os08t0431300-01	Rice	plastid	66.28	59.58
TraesCS3B01G372900.1	Wheat	plastid	62.76	59.03
Zm00001d020426_P001	Maize	plastid	62.53	58.81
TraesCS5D01G212800.1	Wheat	plastid	63.47	58.53
OQU89472	Sorghum	plastid	62.76	58.39
TraesCS5A01G206600.2	Wheat	plastid	63.23	58.19
HORVU5Hr1G061140.1	Barley	plastid	63.0	58.1
TraesCS5B01G204800.1	Wheat	plastid	62.76	57.88
KRG91819	Soybean	endoplasmic reticulum, nucleus	60.66	55.7
KRH34962	Soybean	plastid	60.89	55.44
Zm00001d050383_P001	Maize	plastid	65.81	53.83
Os09t0408600-01	Rice	plastid	63.0	53.69
HORVU5Hr1G112850.3	Barley	plastid	65.81	52.43
KRG92074	Soybean	cytosol, mitochondrion	7.73	30.0
KRH47526	Soybean	mitochondrion	30.91	24.13
KRH06095	Soybean	mitochondrion	30.91	24.13
KRH34708	Soybean	mitochondrion	29.98	18.93
KRG92075	Soybean	mitochondrion	22.25	18.34
KRH50815	Soybean	mitochondrion	21.78	18.06
KRH02272	Soybean	mitochondrion	21.55	17.86
KRH73773	Soybean	mitochondrion	18.5	17.03
KRH14369	Soybean	nucleus	18.27	16.81

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
UniProt:A0A0R0LFB4	EMBL:ACUP02000345	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	EnsemblPlantsGene:GLYMA_01G0819002
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746
InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	EnsemblPlants:KRH75381	ProteinID:KRH75381
ProteinID:KRH75381.1	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968
PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF75	SUPFAM:SSF47005	SUPFAM:SSF51230
SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI0006EDCF22	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:23798025..23800434

Molecular Weight (calculated)

44210.1 Da

IEP (calculated)

9.681

GRAVY (calculated)

0.057

Length

427 amino acids

Sequence
(BLAST)

001: MASPFLPAKT NSATLSFSAA VPGRRLHFAA SPSHSPRRRS SLTVKSKIRE IFMPALSSTM TEGKIVSWVK SEGDVLSKGD SVVVVESDKA DMDVETFYNG
101: ILAVIVVAEG QTAPVGAPIG LLAETEAEVA EAMAAANSAP TPPPKASDTS PAPAPAPEVS DSPRKAVATP YAKKLAKQHK VNIGSVVGTG PFGRVTPADV
201: EKAAGILPAE SNVAPAAVDS APPKAAAAAP AASSASIPGS SVVAFTTMQS AVAKNMVESL SVPTFRVGYP VTTDALDALY EKVRKKGVTM TAILAKAAAM
301: ALVQHPVVNA SCKDGKNFAY NSNINIAVAV ATNGGLITPV LQDADKLDLY LLSQKWKELV EKARAKQLQP HEYNSGTFTL SNLGMFGVDR FDAILPPGQG
401: AIMAVGASKP TVLADKDGFF TVKSKML

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.