Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH43808 | Soybean | nucleus | 88.39 | 73.26 |
| GSMUA_Achr8P07100_001 | Banana | cytosol | 45.81 | 52.21 |
| Solyc07g066370.2.1 | Tomato | cytosol | 45.81 | 47.65 |
| VIT_19s0027g00470.t01 | Wine grape | cytosol | 43.87 | 47.22 |
| AT1G79070.1 | Thale cress | nucleus | 40.65 | 45.65 |
| Bra035089.1-P | Field mustard | cytosol | 40.0 | 44.93 |
| CDX87410 | Canola | cytosol | 40.0 | 44.93 |
| CDX88503 | Canola | nucleus | 40.0 | 44.93 |
| PGSC0003DMT400056908 | Potato | nucleus | 43.87 | 44.44 |
| GSMUA_Achr11P... | Banana | cytosol | 39.35 | 43.26 |
| TraesCS7A01G310700.1 | Wheat | cytosol | 35.48 | 35.03 |
| TraesCS7B01G210500.1 | Wheat | cytosol | 35.48 | 35.03 |
| TraesCS7D01G307200.1 | Wheat | cytosol | 35.48 | 35.03 |
| Os08t0129900-00 | Rice | cytosol, nucleus, plastid | 32.26 | 30.3 |
| Zm00001d049623_P002 | Maize | cytoskeleton, cytosol, nucleus | 29.68 | 27.06 |
| KXG24345 | Sorghum | nucleus | 32.26 | 25.91 |
Protein Annotations
| EMBL:ACUP02009772 | EnsemblPlants:KRH13655 | EnsemblPlantsGene:GLYMA_15G254500 | EntrezGene:100781060 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0031083 | InterPro:Snapin | InterPro:Snapin/Pallidin/Snn1 | PANTHER:PTHR31305 | PFAM:PF14712 | ProteinID:KRH13655 |
| ProteinID:KRH13655.1 | SEG:seg | UniParc:UPI0006EDCD15 | UniProt:A0A0R0G6I7 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr15:-:48370434..48374114
Molecular Weight (calculated)
17210.2 Da
IEP (calculated)
5.521
GRAVY (calculated)
-0.448
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDFSQSQHH FLLRTELNQT TMEAAENDSV VLETTEPSSS HGSDGDDHLR QSSDVLAKGL SSMLSSVISD FDFRAQQTLQ SQNHLSSVID RLTGELDQLL
101: EDAPLPFIMQ QAAKISSVRK RVSSLNLLLK SIQGRIDNID RMLSIGPTHG FKRNS
101: EDAPLPFIMQ QAAKISSVRK RVSSLNLLLK SIQGRIDNID RMLSIGPTHG FKRNS
001: MEQLSDSDHR DSADATTSSC QSTTAEDGQC GGGGEAMARG LSAMLESVIK DFDSKALDTL NSQDELSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
Arabidopsis Description
SNARE-associated protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXI5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.