Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79070.1 | EES20054 | AT1G12840.1 | 21798944 |
| AT1G79070.1 | KXG22879 | AT1G12840.1 | 21798944 |
| AT1G79070.1 | KXG24345 | AT1G79070.1 | 21798944 |
| AT1G79070.1 | OQU83842 | AT3G13940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049623_P002 | Maize | cytoskeleton, cytosol, nucleus | 56.48 | 64.12 |
| TraesCS7A01G310700.1 | Wheat | cytosol | 47.15 | 57.96 |
| TraesCS7B01G210500.1 | Wheat | cytosol | 47.15 | 57.96 |
| TraesCS7D01G307200.1 | Wheat | cytosol | 47.15 | 57.96 |
| Os08t0129900-00 | Rice | cytosol, nucleus, plastid | 44.04 | 51.52 |
| GSMUA_Achr8P07100_001 | Banana | cytosol | 33.16 | 47.06 |
| GSMUA_Achr11P... | Banana | cytosol | 32.12 | 43.97 |
| Solyc07g066370.2.1 | Tomato | cytosol | 31.09 | 40.27 |
| PGSC0003DMT400056908 | Potato | nucleus | 30.57 | 38.56 |
| AT1G79070.1 | Thale cress | nucleus | 25.91 | 36.23 |
| CDX88503 | Canola | nucleus | 24.87 | 34.78 |
| Bra035089.1-P | Field mustard | cytosol | 24.35 | 34.06 |
| CDX87410 | Canola | cytosol | 24.35 | 34.06 |
| VIT_19s0027g00470.t01 | Wine grape | cytosol | 24.87 | 33.33 |
| KRH13655 | Soybean | nucleus | 25.91 | 32.26 |
| KRH43808 | Soybean | nucleus | 26.94 | 27.81 |
Protein Annotations
| Gene3D:3.90.20.10 | MapMan:35.2 | UniProt:A0A1B6PFJ6 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031083 | GO:GO:0046873 |
| EnsemblPlants:KXG24345 | ProteinID:KXG24345 | ProteinID:KXG24345.2 | PFAM:PF14712 | PANTHER:PTHR31305 | EnsemblPlantsGene:SORBI_3007G028500 |
| InterPro:Snapin | InterPro:Snapin/Pallidin/Snn1 | UniParc:UPI000B8B9FDC | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr7:+:2559285..2562098
Molecular Weight (calculated)
20600.0 Da
IEP (calculated)
4.625
GRAVY (calculated)
-0.389
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGADLPSYS AATAADGDRP PESAVDGGVE NERAAAPTPE RCEAPPPESA VDGGVEDERA AAPTPERCEA LASAIAGVLA GALREHEERA AATARSQDEV
101: AAAVDRLNGE LDRLLENAPS MIIMQHSARI SSIRKRISAM NMLLKSIQRR IDNIDRIIST DHSSPVQKAG NELGSRCPPF FSYHFSSFIF GWS
101: AAAVDRLNGE LDRLLENAPS MIIMQHSARI SSIRKRISAM NMLLKSIQRR IDNIDRIIST DHSSPVQKAG NELGSRCPPF FSYHFSSFIF GWS
001: MEQLSDSDHR DSADATTSSC QSTTAEDGQC GGGGEAMARG LSAMLESVIK DFDSKALDTL NSQDELSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
Arabidopsis Description
SNARE-associated protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXI5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.