Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13655 | Soybean | nucleus | 73.26 | 88.39 |
| GSMUA_Achr8P07100_001 | Banana | cytosol | 38.5 | 52.94 |
| VIT_19s0027g00470.t01 | Wine grape | cytosol | 39.57 | 51.39 |
| Solyc07g066370.2.1 | Tomato | cytosol | 39.04 | 48.99 |
| AT1G79070.1 | Thale cress | nucleus | 34.76 | 47.1 |
| CDX88503 | Canola | nucleus | 34.22 | 46.38 |
| PGSC0003DMT400056908 | Potato | nucleus | 37.43 | 45.75 |
| Bra035089.1-P | Field mustard | cytosol | 33.16 | 44.93 |
| CDX87410 | Canola | cytosol | 33.16 | 44.93 |
| GSMUA_Achr11P... | Banana | cytosol | 33.16 | 43.97 |
| TraesCS7A01G310700.1 | Wheat | cytosol | 31.02 | 36.94 |
| TraesCS7B01G210500.1 | Wheat | cytosol | 31.02 | 36.94 |
| TraesCS7D01G307200.1 | Wheat | cytosol | 31.02 | 36.94 |
| Os08t0129900-00 | Rice | cytosol, nucleus, plastid | 26.74 | 30.3 |
| Zm00001d049623_P002 | Maize | cytoskeleton, cytosol, nucleus | 27.27 | 30.0 |
| KXG24345 | Sorghum | nucleus | 27.81 | 26.94 |
Protein Annotations
| EntrezGene:100527746 | MapMan:35.2 | EMBL:ACUP02004897 | ncoils:Coil | EnsemblPlantsGene:GLYMA_08G173000 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031083 | UniProt:I1KU57 | EnsemblPlants:KRH43808 |
| ProteinID:KRH43808 | ProteinID:KRH43808.1 | PFAM:PF14712 | PANTHER:PTHR31305 | InterPro:Snapin | InterPro:Snapin/Pallidin/Snn1 |
| TMHMM:TMhelix | UniParc:UPI00023C6A34 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr8:+:13754741..13759415
Molecular Weight (calculated)
21007.7 Da
IEP (calculated)
4.789
GRAVY (calculated)
-0.275
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNSSQSQHH FLPRTELNQT TMEAEENDSV VVESTEPSSS HGSDGDDQLR QSSDVLAKGL SSMLSSVIND FDFRAQQTLQ SQNHLSSAID RLTGELDQLL
101: EDAPLPFIMQ HAAKISSVRK RVSSLNSLLK SIQGRIDNID RMLSFGTTHG IGMSPPETLF YSYFLIISNY EYWIFFIVCF PTHMLSL
101: EDAPLPFIMQ HAAKISSVRK RVSSLNSLLK SIQGRIDNID RMLSFGTTHG IGMSPPETLF YSYFLIISNY EYWIFFIVCF PTHMLSL
001: MEQLSDSDHR DSADATTSSC QSTTAEDGQC GGGGEAMARG LSAMLESVIK DFDSKALDTL NSQDELSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
Arabidopsis Description
SNARE-associated protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXI5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.