Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_09s0002g01860.t01 | |
| VIT_14s0068g01280.t01 | |
| VIT_19s0027g00470.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79070.1 | VIT_14s0068g01280.t01 | AT1G12840.1 | 21798944 |
| AT1G79070.1 | VIT_19s0027g00470.t01 | AT1G79070.1 | 21798944 |
| AT1G79070.1 | VIT_09s0002g01860.t01 | AT3G13940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P07100_001 | Banana | cytosol | 44.44 | 47.06 |
| Solyc07g066370.2.1 | Tomato | cytosol | 45.83 | 44.3 |
| KRH13655 | Soybean | nucleus | 47.22 | 43.87 |
| GSMUA_Achr11P... | Banana | cytosol | 41.67 | 42.55 |
| PGSC0003DMT400056908 | Potato | nucleus | 44.44 | 41.83 |
| AT1G79070.1 | Thale cress | nucleus | 38.89 | 40.58 |
| KRH43808 | Soybean | nucleus | 51.39 | 39.57 |
| Bra035089.1-P | Field mustard | cytosol | 37.5 | 39.13 |
| CDX87410 | Canola | cytosol | 37.5 | 39.13 |
| CDX88503 | Canola | nucleus | 37.5 | 39.13 |
| TraesCS7A01G310700.1 | Wheat | cytosol | 34.72 | 31.85 |
| TraesCS7D01G307200.1 | Wheat | cytosol | 34.72 | 31.85 |
| Os08t0129900-00 | Rice | cytosol, nucleus, plastid | 35.42 | 30.91 |
| TraesCS7B01G210500.1 | Wheat | cytosol | 33.33 | 30.57 |
| Zm00001d049623_P002 | Maize | cytoskeleton, cytosol, nucleus | 31.94 | 27.06 |
| KXG24345 | Sorghum | nucleus | 33.33 | 24.87 |
Protein Annotations
| ArrayExpress:VIT_19s0027g00470 | EMBL:FN595234 | EnsemblPlants:VIT_19s0027g00470.t01 | EnsemblPlantsGene:VIT_19s0027g00470 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0031083 | InterPro:Snapin | InterPro:Snapin/Pallidin/Snn1 | PANTHER:PTHR31305 | PFAM:PF14712 | ProteinID:CBI21789 |
| ProteinID:CBI21789.3 | SEG:seg | UniParc:UPI0001BE224F | UniProt:D7SWY9 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr19:+:19354139..19365811
Molecular Weight (calculated)
16362.2 Da
IEP (calculated)
9.835
GRAVY (calculated)
0.249
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGSVIRDFD SRADAVIRSQ DHLSLVIDRL TGELDKLLED APLPFIMQHA AKISGVRKRV SSLNSLLKSI QRRVDNIDGM LSMGLAHGKE NFPSISSLIL
101: LFLFHDFVNI WIKLQALLSI SLRKQSQQVL DIINIHIYER FLVI
101: LFLFHDFVNI WIKLQALLSI SLRKQSQQVL DIINIHIYER FLVI
001: MEQLSDSDHR DSADATTSSC QSTTAEDGQC GGGGEAMARG LSAMLESVIK DFDSKALDTL NSQDELSGSL DRLVQELDQL LENAPLPFIV QHASRISSVK
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
101: QRVSSLNLVL KSVQRRIDNI DHMLSANTTQ EKASSETT
Arabidopsis Description
SNARE-associated protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXI5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.