Factsheet for VIT_14s0068g01280.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
plasma membrane 1
mitochondrion 6
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g03910.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	VIT_18s0001g03910.t01	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g00460.t01	Wine grape	cytosol, plastid	85.07	85.07
KRH08399	Soybean	endoplasmic reticulum	84.0	84.0
KRH70055	Soybean	endoplasmic reticulum	83.73	83.73
KRG94673	Soybean	endoplasmic reticulum	83.73	83.29
AT1G12840.1	Thale cress	cytosol	82.13	82.13
CDY66539	Canola	cytosol	82.13	81.91
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	81.87	81.65
CDY21070	Canola	cytosol	81.87	81.65
Bra019792.1-P	Field mustard	cytosol	81.6	81.6
CDX98037	Canola	cytosol	81.6	81.6
KRH06855	Soybean	endoplasmic reticulum	83.2	81.25
CDY19421	Canola	cytosol	81.6	81.17
CDX71966	Canola	cytosol	81.6	80.95
GSMUA_Achr4P08830_001	Banana	mitochondrion, plastid	54.67	80.39
EES20054	Sorghum	plastid	79.2	78.78
Zm00001d039157_P001	Maize	plastid	78.93	78.51
Os05t0593100-01	Rice	plasma membrane	78.4	77.98
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	53.6	77.91
Zm00001d044665_P001	Maize	plastid	75.73	75.33
TraesCS1B01G475400.3	Wheat	golgi	74.13	73.16
TraesCS1A01G440200.1	Wheat	cytosol	73.87	72.89
TraesCS1D01G449200.3	Wheat	cytosol	73.6	72.63
KXG22879	Sorghum	plastid	76.8	69.9
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	73.33	69.8
CDY16036	Canola	cytosol	81.87	64.77
TraesCS1A01G282100.1	Wheat	cytosol	63.47	62.96
TraesCS1D01G281400.1	Wheat	cytosol	62.93	62.6
TraesCS1B01G291300.1	Wheat	cytosol	62.4	62.07
Bra026951.1-P	Field mustard	cytosol	81.87	53.95
CDY26596	Canola	cytosol	81.87	50.0
TraesCS5A01G063700.1	Wheat	cytosol	30.93	47.93
TraesCS7A01G285700.1	Wheat	cytosol	17.87	46.21
CDY05652	Canola	cytosol	9.87	43.53
Zm00001d012311_P001	Maize	plastid	15.47	28.86

Protein Annotations

Gene3D:1.20.1460.10	EntrezGene:100267004	wikigene:100267004	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180
InterPro:ATPase_V1-cplx_csu	ProteinID:CBI21291	ProteinID:CBI21291.3	UniProt:D7SVJ2	EMBL:FN595232	GO:GO:0000221
GO:GO:0000325	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005794	GO:GO:0005886
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008553	GO:GO:0009507	GO:GO:0009536
GO:GO:0009653	GO:GO:0009826	GO:GO:0009987	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0016787	GO:GO:0033180	GO:GO:0040007
GO:GO:0046961	EntrezGene:LOC100267004	wikigene:LOC100267004	PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0
SUPFAM:SSF118203	TIGR:TC58228	TIGR:TC60287	UniParc:UPI0001984A03	ArrayExpress:VIT_14s0068g01280	EnsemblPlantsGene:VIT_14s0068g01280
EnsemblPlants:VIT_14s0068g01280.t01	InterPro:Vac_ATP_synth_c_sf	unigene:Vvi.1001	RefSeq:XP_002275510	RefSeq:XP_002275510.1	SEG:seg

Description

V-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:D7SVJ2]

Coordinates

chr14:-:25023155..25028086

Molecular Weight (calculated)

42667.4 Da

IEP (calculated)

6.253

GRAVY (calculated)

-0.325

Length

375 amino acids

Sequence
(BLAST)

001: MATRYWSVSL PVRTSASSLW NRLQDAISKH SFDTPLYRFN IPNLRVGTLD SLLSLSDDLQ KSNSFVEGVT HKIRRQIEDL EKASGVETSA LTVDGVPVDS
101: YLTRFVWDEA KFPTMSPLRE IVDSIHHQVS KIEDDLKVRI AEYNNVRSQL NAINRKQSGS LAVRDLSNLV KPEDIIASEH LVTLLAIVPK YSQKDWLSTY
201: ETLTSYVVPR SSKKLHEDNE YALYTVTLFH RVADNFRTNA RERGFQIRDF EYSSEAQESR KEELEKLMRD QETFRSTLLQ WCYTSYGEVF SSWMHFCAVR
301: VFAESILRYG LPPSFLACVL APSVKSEKKV RSILEGLCDS TNSAFWKSED DAGGMAGLGG DADAHPYVCF TINLV

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.