CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
vacuole 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16605
KRH16606
KRH18814
KRH18816
KRH53180

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	KRH16605	AT1G77760.1	21798944
AT1G12840.1	KRH16606	AT1G77760.1	21798944
AT1G12840.1	KRH18814	AT1G77760.1	21798944
AT1G12840.1	KRH18816	AT1G77760.1	21798944
AT1G12840.1	KRH53180	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06855	Soybean	endoplasmic reticulum	97.08	95.31
KRH08399	Soybean	endoplasmic reticulum	89.92	90.4
KRH70055	Soybean	endoplasmic reticulum	89.12	89.6
CDY66539	Canola	cytosol	83.55	83.78
VIT_14s0068g01280.t01	Wine grape	mitochondrion	83.29	83.73
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	83.02	83.24
CDY21070	Canola	cytosol	83.02	83.24
AT1G12840.1	Thale cress	cytosol	82.76	83.2
CDX98037	Canola	cytosol	82.49	82.93
Bra019792.1-P	Field mustard	cytosol	82.49	82.93
CDY19421	Canola	cytosol	82.49	82.49
Solyc03g097790.2.1	Tomato	plastid	65.52	81.52
CDX71966	Canola	cytosol	81.7	81.48
GSMUA_Achr4P08830_001	Banana	mitochondrion, plastid	53.05	78.43
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	52.25	76.36
CDY16036	Canola	cytosol	81.7	64.98
Bra026951.1-P	Field mustard	cytosol	81.7	54.13
CDY05652	Canola	cytosol	12.2	54.12
KRH62549	Soybean	mitochondrion	19.1	52.17
CDY26596	Canola	cytosol	81.7	50.16

Protein Annotations

Gene3D:1.20.1460.10	EntrezGene:100813963	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	EMBL:ACUP02012012
InterPro:ATPase_V1-cplx_csu	EnsemblPlantsGene:GLYMA_19G101000	GO:GO:0000221	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810
GO:GO:0006811	GO:GO:0008150	GO:GO:0008553	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0016787	GO:GO:0033180	GO:GO:0046961	UniProt:I1N7Z4	EnsemblPlants:KRG94673
ProteinID:KRG94673	ProteinID:KRG94673.1	PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0	SUPFAM:SSF118203
UniParc:UPI000233E021	InterPro:Vac_ATP_synth_c_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:34817361..34822840

Molecular Weight (calculated)

42799.4 Da

IEP (calculated)

5.955

GRAVY (calculated)

-0.384

Length

377 amino acids

Sequence
(BLAST)

001: MASRYWAVSL PVHNSASSQL WNQLQERISK HSFDTPLYRF NIPNLRVGTL DSLLSLSDDL AKSNNFVEGV THKIRRQIEE LERVSGIDSG ALTVDGVPVD
101: SYLTRFVWDE AKYPTMSPLK EIVDGIHSQV AKIEDDLKVR VSEYNNIRSQ LNAINRKQTG SLAVRDLSNL VKPEDIVTSE NLTTLLAIVS KYSQKDWLSS
201: YETLTNYVVP RSSKKLYEDN EYALYTVTLF SRVADNFRTS AREKGFQIRD FEYSPETHEN RKQELDKLVQ DQERLRTSLL QWCYTSYGEV FSSWMHFCAV
301: RLFAESILRY GLPPSFLACV LAPSVKSEKK VRSILEGLSD STNSAYWKNE DEVGAGMAGL AGDADGHPYV SFTINLA

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.