CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 5
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08399	Soybean	endoplasmic reticulum	58.7	21.6
KRH70055	Soybean	endoplasmic reticulum	58.7	21.6
KRG94673	Soybean	endoplasmic reticulum	52.17	19.1
TraesCS7A01G285700.1	Wheat	cytosol	19.57	18.62
KRH06855	Soybean	endoplasmic reticulum	51.45	18.49
Zm00001d039157_P001	Maize	plastid	46.38	16.98
EES20054	Sorghum	plastid	46.38	16.98
Zm00001d044665_P001	Maize	plastid	45.65	16.71
Os05t0593100-01	Rice	plasma membrane	45.65	16.71
KXG22879	Sorghum	plastid	45.65	15.29
TraesCS1A01G440200.1	Wheat	cytosol	42.03	15.26
TraesCS1B01G475400.3	Wheat	golgi	42.03	15.26
TraesCS1D01G449200.3	Wheat	cytosol	42.03	15.26
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	42.75	14.97
TraesCS1B01G291300.1	Wheat	cytosol	34.78	12.73
TraesCS1A01G282100.1	Wheat	cytosol	34.06	12.43
TraesCS1D01G281400.1	Wheat	cytosol	32.61	11.94
Zm00001d012311_P001	Maize	plastid	15.94	10.95
TraesCS5A01G063700.1	Wheat	cytosol	5.07	2.89
GSMUA_AchrUn_...	Banana	cytosol	2.17	1.95
Solyc03g097800.2.1	Tomato	nucleus	0.0	0.0
GSMUA_Achr4P08840_001	Banana	cytosol	0.0	0.0

Protein Annotations

MapMan:24.1.1.2.3	EMBL:ACUP02002303	EnsemblPlantsGene:GLYMA_04G115400	GO:GO:0000221	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0006810	GO:GO:0008150	GO:GO:0008553	GO:GO:0015078	GO:GO:0015991	GO:GO:0016020
GO:GO:0016787	GO:GO:0033180	GO:GO:0046961	UniProt:K7KJH7	EnsemblPlants:KRH62549	ProteinID:KRH62549
ProteinID:KRH62549.1	SUPFAM:SSF118203	UniParc:UPI000294B987	InterPro:Vac_ATP_synth_c_sf	:	:

Description

hypothetical protein

Coordinates

chr4:-:13145646..13147130

Molecular Weight (calculated)

16387.5 Da

IEP (calculated)

6.890

GRAVY (calculated)

-0.522

Length

138 amino acids

Sequence
(BLAST)

001: MVTRYRVVSL PIQNSASTLW NKLQEQISEH SFDTLLYRNP RLPPFPQQQY RQVSHMIRRQ IEELESVWHG DQWFDGGWSP RFSVLLWWMQ EIIDGIHGQV
101: AKNEDDLKVH VSEYNNICTD LNDLFAIHRK IGSLAMKH

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.