Factsheet for HORVU1Hr1G094800.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

plastid 1
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, mitochondrion
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G003300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	HORVU6Hr1G003300.1	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G449200.3	Wheat	cytosol	95.18	98.68
TraesCS1B01G475400.3	Wheat	golgi	95.18	98.68
TraesCS1A01G440200.1	Wheat	cytosol	95.18	98.68
EES20054	Sorghum	plastid	82.23	85.94
Os05t0593100-01	Rice	plasma membrane	81.22	84.88
Zm00001d039157_P001	Maize	plastid	80.96	84.62
Zm00001d044665_P001	Maize	plastid	80.2	83.82
KXG22879	Sorghum	plastid	81.98	78.4
GSMUA_Achr4P08840_001	Banana	cytosol	25.89	76.12
VIT_17s0000g00460.t01	Wine grape	cytosol, plastid	71.83	75.47
CDY21070	Canola	cytosol	70.3	73.67
CDY66539	Canola	cytosol	70.3	73.67
Bra019792.1-P	Field mustard	cytosol	70.05	73.6
CDX98037	Canola	cytosol	70.05	73.6
CDY19421	Canola	cytosol	70.3	73.47
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	70.05	73.4
VIT_14s0068g01280.t01	Wine grape	mitochondrion	69.8	73.33
AT1G12840.1	Thale cress	cytosol	69.29	72.8
CDX71966	Canola	cytosol	69.54	72.49
GSMUA_AchrUn_...	Banana	cytosol	27.66	70.78
Solyc03g097800.2.1	Tomato	nucleus	15.48	70.11
CDY16036	Canola	cytosol	69.54	57.81
Bra026951.1-P	Field mustard	cytosol	69.8	48.33
CDY26596	Canola	cytosol	69.8	44.79
CDY05652	Canola	cytosol	9.39	43.53
KRH62549	Soybean	mitochondrion	14.97	42.75

Protein Annotations

Gene3D:1.20.1460.10	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	UniProt:A0A287GTR5	InterPro:ATPase_V1-cplx_csu
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150
GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0033180	EnsemblPlantsGene:HORVU1Hr1G094800	EnsemblPlants:HORVU1Hr1G094800.2
PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0	SUPFAM:SSF118203	UniParc:UPI000B4836F1	InterPro:Vac_ATP_synth_c_sf
SEG:seg	:	:	:	:	:

Description

V-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A287GTR5]

Coordinates

chrchr1H:+:556417253..556421400

Molecular Weight (calculated)

44593.1 Da

IEP (calculated)

7.147

GRAVY (calculated)

-0.343

Length

394 amino acids

Sequence
(BLAST)

001: RRPPPPPPPR RRRPTMATRY WIAALPVADD NVAAGKTALW ARLQEAISRH SFDTPLYRFT VPDLRPGTLD SLLALSDDLV KSNIFIEGVS HKIRRQIEDL
101: ERAGGVEPGT LTVDGVPVDS YLTRFVWDEG KYPVNAPLKE TVASIQSQVA KIEDDMKVRV AEYGNVKSQL GAINRKQTGS LAVRDLSNLI KPEDMVTSEH
201: LVTLLSIVPK YSQKDWLASY ESLDTFVVPR SSKKLYEDNE YALYTVTLFA KVVDNFKVHA REKGFQIRDF EYSPEAQESR KQELEKLLQD QEVMRTSLLQ
301: WCYASYSEVF SSWMHFSAVR VFVESILRYG LPARFLSVVL APSTKSEKKV RNILEGLCGN TNSYWRSEDD VGMAAGLGGE TESHPYVSFT INFV

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.