Factsheet for GSMUA_Achr4P08840_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	91.79	79.87
Solyc03g097800.2.1	Tomato	nucleus	50.0	77.01
TraesCS5A01G063700.1	Wheat	cytosol	50.0	27.69
EES20054	Sorghum	plastid	77.61	27.59
TraesCS1B01G475400.3	Wheat	golgi	77.61	27.37
Os05t0593100-01	Rice	plasma membrane	76.87	27.32
TraesCS1D01G449200.3	Wheat	cytosol	76.87	27.11
TraesCS1A01G440200.1	Wheat	cytosol	76.87	27.11
Zm00001d039157_P001	Maize	plastid	74.63	26.53
Zm00001d044665_P001	Maize	plastid	73.88	26.26
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	76.12	25.89
KXG22879	Sorghum	plastid	76.12	24.76
TraesCS1A01G282100.1	Wheat	cytosol	64.18	22.75
TraesCS1D01G281400.1	Wheat	cytosol	63.43	22.55
TraesCS1B01G291300.1	Wheat	cytosol	62.69	22.28
TraesCS7A01G285700.1	Wheat	cytosol	6.72	6.21
Zm00001d012311_P001	Maize	plastid	5.22	3.48
GSMUA_Achr4P08830_001	Banana	mitochondrion, plastid	1.49	0.78
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	1.49	0.78
KRH62549	Soybean	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.1460.10	MapMan:24.1.1.2.3	InterPro:ATPase_V1-cplx_csu	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0033180	EnsemblPlantsGene:GSMUA_Achr4G08840_001	EnsemblPlants:GSMUA_Achr4P08840_001	EnsemblPlants:GSMUA_Achr4T08840_001	UniProt:M0SMA1
PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0	SUPFAM:SSF118203	UniParc:UPI000295C092	InterPro:Vac_ATP_synth_c_sf

Description

V-type proton ATPase subunit C [Source:GMGC_GENE;Acc:GSMUA_Achr4G08840_001]

Coordinates

chr4:+:6448089..6450734

Molecular Weight (calculated)

15394.3 Da

IEP (calculated)

4.979

GRAVY (calculated)

-0.175

Length

134 amino acids

Sequence
(BLAST)

001: MFFVVQIREF EYSPEAQESR KQEFEKLIQD QESKRRSLLQ WCYASYGEVF SSWMHFCAVR VFAESILRYG LPPQFLAVVL APSVKNEKKV RGILEELCGN
101: VNSSYWKSED EVGLAGIGGE AEAHPYVSFT INLV

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.