Factsheet for TraesCS1D01G281400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G376700.1
TraesCS6A01G017500.2
TraesCS6A01G326200.1
TraesCS6B01G024900.1
TraesCS6B01G356800.1
TraesCS6D01G020700.1
TraesCS6D01G306000.1
TraesCS7A01G078500.1
TraesCS7D01G073700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	TraesCS4A01G376700.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6A01G017500.2	AT1G77760.1	21798944
AT1G12840.1	TraesCS6A01G326200.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6B01G024900.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6B01G356800.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6D01G020700.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6D01G306000.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS7A01G078500.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS7D01G073700.1	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G282100.1	Wheat	cytosol	96.02	95.77
TraesCS1B01G291300.1	Wheat	cytosol	94.96	94.96
EES20054	Sorghum	plastid	70.29	70.29
Zm00001d039157_P001	Maize	plastid	69.23	69.23
TraesCS1D01G449200.3	Wheat	cytosol	69.23	68.68
Os05t0593100-01	Rice	plasma membrane	68.44	68.44
Zm00001d044665_P001	Maize	plastid	67.37	67.37
Solyc03g097800.2.1	Tomato	nucleus	14.85	64.37
GSMUA_Achr4P08840_001	Banana	cytosol	22.55	63.43
KXG22879	Sorghum	plastid	68.97	63.11
VIT_14s0068g01280.t01	Wine grape	mitochondrion	62.6	62.93
VIT_17s0000g00460.t01	Wine grape	cytosol, plastid	61.8	62.13
GSMUA_AchrUn_...	Banana	cytosol	24.4	59.74
CDY66539	Canola	cytosol	59.15	59.31
CDY21070	Canola	cytosol	59.15	59.31
AT1G12840.1	Thale cress	cytosol	58.89	59.2
CDY19421	Canola	cytosol	59.15	59.15
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	58.89	59.04
Bra019792.1-P	Field mustard	cytosol	58.62	58.93
CDX98037	Canola	cytosol	58.62	58.93
CDX71966	Canola	cytosol	58.36	58.2
CDY16036	Canola	cytosol	58.62	46.62
Bra026951.1-P	Field mustard	cytosol	58.62	38.84
CDY05652	Canola	cytosol	8.49	37.65
CDY26596	Canola	cytosol	58.62	35.99
KRH62549	Soybean	mitochondrion	11.94	32.61

Protein Annotations

Gene3D:1.20.1460.10	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	InterPro:ATPase_V1-cplx_csu	ncoils:Coil
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015078
GO:GO:0015991	GO:GO:0016020	GO:GO:0033180	PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0
SUPFAM:SSF118203	EnsemblPlantsGene:TraesCS1D01G281400	EnsemblPlants:TraesCS1D01G281400.1	InterPro:Vac_ATP_synth_c_sf	TIGR:cd14785	SEG:seg

Description

No Description!

Coordinates

chr1D:-:379482389..379485785

Molecular Weight (calculated)

42202.2 Da

IEP (calculated)

5.077

GRAVY (calculated)

-0.165

Length

377 amino acids

Sequence
(BLAST)

001: MPTKYLIAAL PVQSAGGDAA AAENSLWRSL EDSLSQHAID TPLYRFTVPA LKGGTLDSLL ALSDDLIRSN LFIEGASHRI RRQIEDLERA GGAGEGGSLI
101: TVDGVPVDSY LSRFVWDERK YPTKSPLKDI IASILSRITK IEDEIKVQAA KYNSCKNHLR TVYRKQSVSL VVRDLSNLVK PEDIITSEHL ATLLAIVPKC
201: SQKDWLSCYE SLDTFVVPRS SKRLYEDDEY ALYTVTLFAK VVGNFKAHAQ EKGFLIRDFV YSPEAQESKD DLEKLLQDEE AMRTSLLQLL YARYSEVFSS
301: WMHICAVFVF AESILRYGLS PSILCVILAP SMESEKKVRD ILEEHCGNAN SNDFWKSDDD GLGGEIHPYV SSTMNVV

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.