Factsheet for Bra016752.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
vacuole 2
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003670.1-P
Bra008333.1-P
Bra015656.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	Bra003670.1-P	AT1G77760.1	21798944
AT1G12840.1	Bra008333.1-P	AT1G77760.1	21798944
AT1G12840.1	Bra015656.1-P	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21070	Canola	cytosol	99.47	99.47
CDY66539	Canola	cytosol	99.47	99.47
Bra019792.1-P	Field mustard	cytosol	96.54	96.8
AT1G12840.1	Thale cress	cytosol	95.48	95.73
KRG94673	Soybean	endoplasmic reticulum	83.24	83.02
VIT_14s0068g01280.t01	Wine grape	mitochondrion	81.65	81.87
KRH08399	Soybean	endoplasmic reticulum	80.85	81.07
KRH70055	Soybean	endoplasmic reticulum	80.59	80.8
KRH06855	Soybean	endoplasmic reticulum	81.65	79.95
Solyc03g097790.2.1	Tomato	plastid	63.03	78.22
EES20054	Sorghum	plastid	76.33	76.13
GSMUA_Achr4P08830_001	Banana	mitochondrion, plastid	51.6	76.08
Os05t0593100-01	Rice	plasma membrane	75.8	75.6
Zm00001d039157_P001	Maize	plastid	75.53	75.33
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	51.6	75.19
Zm00001d044665_P001	Maize	plastid	75.0	74.8
TraesCS1A01G440200.1	Wheat	cytosol	72.87	72.11
TraesCS1B01G475400.3	Wheat	golgi	72.87	72.11
TraesCS1D01G449200.3	Wheat	cytosol	72.61	71.84
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	73.4	70.05
KXG22879	Sorghum	plastid	75.8	69.17
Bra026951.1-P	Field mustard	cytosol	96.54	63.8
TraesCS1B01G291300.1	Wheat	cytosol	59.31	59.15
TraesCS1D01G281400.1	Wheat	cytosol	59.04	58.89
TraesCS1A01G282100.1	Wheat	cytosol	59.04	58.73
TraesCS7A01G285700.1	Wheat	cytosol	18.35	47.59
TraesCS5A01G063700.1	Wheat	cytosol	30.32	47.11
Zm00001d012311_P001	Maize	plastid	14.89	27.86

Protein Annotations

Gene3D:1.20.1460.10	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	InterPro:ATPase_V1-cplx_csu	EnsemblPlantsGene:Bra016752
EnsemblPlants:Bra016752.1	EnsemblPlants:Bra016752.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0033180	UniProt:M4DJS4	PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0
SUPFAM:SSF118203	UniParc:UPI0002546034	InterPro:Vac_ATP_synth_c_sf	SEG:seg	:	:

Description

AT1G12840 (E=3e-193) DET3, ATVHA-C | DET3 (DE-ETIOLATED 3); proton-transporting ATPase, rotational mechanism

Coordinates

chrA08:-:19809666..19811762

Molecular Weight (calculated)

42717.6 Da

IEP (calculated)

5.353

GRAVY (calculated)

-0.298

Length

376 amino acids

Sequence
(BLAST)

001: MTSRCWVVSL PVKDSSSSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVENIQSQVA KIEDDLKVRV AEYNNVRGQL NAINRKQSGS LAVRDLSNLV KPEDIVASEH LVTLLAVVPK YSQKDWLACY
201: ETLTEYVVPR SSKKLFEDNE YALYTVTLFT RVADNYRTSA REKGFQIRDF EHSVEAQETR KQELEKLVQD QESLRTSLLQ WCYTSYGEVF SSWMHFCAVR
301: IFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DGGAAMAGLA GDSETHPYVS FTINLA

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.