Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05652 | Canola | cytosol | 13.1 | 22.35 |
| TraesCS1A01G440200.1 | Wheat | cytosol | 57.93 | 22.11 |
| KRH62549 | Soybean | mitochondrion | 18.62 | 19.57 |
| CDY19421 | Canola | cytosol | 48.28 | 18.57 |
| Bra019792.1-P | Field mustard | cytosol | 47.59 | 18.4 |
| AT1G12840.1 | Thale cress | cytosol | 47.59 | 18.4 |
| CDX98037 | Canola | cytosol | 47.59 | 18.4 |
| Bra016752.1-P | Field mustard | cytosol, mitochondrion, plastid | 47.59 | 18.35 |
| CDY21070 | Canola | cytosol | 47.59 | 18.35 |
| CDY66539 | Canola | cytosol | 47.59 | 18.35 |
| CDX71966 | Canola | cytosol | 47.59 | 18.25 |
| VIT_14s0068g01280.t01 | Wine grape | mitochondrion | 46.21 | 17.87 |
| VIT_17s0000g00460.t01 | Wine grape | cytosol, plastid | 45.52 | 17.6 |
| TraesCS1A01G282100.1 | Wheat | cytosol | 43.45 | 16.67 |
| CDY16036 | Canola | cytosol | 47.59 | 14.56 |
| Bra026951.1-P | Field mustard | cytosol | 47.59 | 12.13 |
| CDY26596 | Canola | cytosol | 47.59 | 11.24 |
| Solyc03g097800.2.1 | Tomato | nucleus | 5.52 | 9.2 |
| GSMUA_AchrUn_... | Banana | cytosol | 8.97 | 8.44 |
| GSMUA_Achr4P08840_001 | Banana | cytosol | 6.21 | 6.72 |
| TraesCS5A01G063700.1 | Wheat | cytosol | 3.45 | 2.07 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G285700.1 | EnsemblPlantsGene:TraesCS7A01G285700 | Gene3D:1.20.1460.10 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015078 | GO:GO:0015991 | GO:GO:0016020 | GO:GO:0033180 |
| InterPro:ATPase_V1-cplx_csu | InterPro:Vac_ATP_synth_c_sf | PANTHER:PTHR10137 | PANTHER:PTHR10137:SF0 | PFAM:PF03223 | SEG:seg |
| SUPFAM:SSF118203 | MapMan:24.1.1.2.3 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:331175778..331176710
Molecular Weight (calculated)
16237.4 Da
IEP (calculated)
5.221
GRAVY (calculated)
-0.290
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: TLDSLLALSD DLVKYNIFIE GISHKIRRQI KDLEHAVGVE PGTLTVDGVP IDSYLTGSVS GRGQCCFLHC SSAYQRLLTL YPVNTPLKET FASIQSQAAK
101: IEDDMKPEVY EFKIGGQFFR RPGDPPLDQV IEILQKHKDK SQDEI
101: IEDDMKPEVY EFKIGGQFFR RPGDPPLDQV IEILQKHKDK SQDEI
001: MEKIVRSSSL ILLVGLLLFM NFHGFVRIAE ATKRRIEISD DLDDVEDNEE DESWKEWGKK ATTPEFDPPP DFTNMGFDQI QEEMAKRTFG TVVGFVKLRL
101: GVPRTKDVVI DIAMKWTKVL RTGGIGVRFM AVDRSTVMFN MQNGKLVTEL REFVLSQEEA YEVKIGKQEF RRPGDPPFED VFDKFQAEQR KDHEDGDGNK
201: NDLTKDEL
101: GVPRTKDVVI DIAMKWTKVL RTGGIGVRFM AVDRSTVMFN MQNGKLVTEL REFVLSQEEA YEVKIGKQEF RRPGDPPFED VFDKFQAEQR KDHEDGDGNK
201: NDLTKDEL
Arabidopsis Description
At2g46000 [Source:UniProtKB/TrEMBL;Acc:O82812]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.