Factsheet for Solyc03g097800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 1
extracellular 3
vacuole 3
endoplasmic reticulum 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P08840_001	Banana	cytosol	77.01	50.0
GSMUA_AchrUn_...	Banana	cytosol	77.01	43.51
EES20054	Sorghum	plastid	75.86	17.51
Zm00001d039157_P001	Maize	plastid	73.56	16.98
Os05t0593100-01	Rice	plasma membrane	73.56	16.98
Zm00001d044665_P001	Maize	plastid	72.41	16.71
TraesCS1A01G440200.1	Wheat	cytosol	71.26	16.32
TraesCS1D01G449200.3	Wheat	cytosol	71.26	16.32
TraesCS1B01G475400.3	Wheat	golgi	70.11	16.05
TraesCS5A01G063700.1	Wheat	cytosol	43.68	15.7
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	70.11	15.48
KXG22879	Sorghum	plastid	72.41	15.29
TraesCS1A01G282100.1	Wheat	cytosol	65.52	15.08
TraesCS1B01G291300.1	Wheat	cytosol	64.37	14.85
TraesCS1D01G281400.1	Wheat	cytosol	64.37	14.85
TraesCS7A01G285700.1	Wheat	cytosol	9.2	5.52
Zm00001d012311_P001	Maize	plastid	9.2	3.98
Solyc03g097790.2.1	Tomato	plastid	2.3	0.66
KRH62549	Soybean	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.1460.10	MapMan:24.1.1.2.3	Gene3D:3.30.70.1180	InterPro:ATPase_V1-cplx_csu	GO:GO:0000221	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008553	GO:GO:0015078
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0033180	GO:GO:0046961
UniProt:K4BJJ7	PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0	SUPFAM:SSF118203	EnsemblPlantsGene:Solyc03g097800.2
EnsemblPlants:Solyc03g097800.2.1	UniParc:UPI0002768587	InterPro:Vac_ATP_synth_c_sf	:	:	:

Description

V-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:K4BJJ7]

Coordinates

chr3:+:60127878..60130078

Molecular Weight (calculated)

9594.5 Da

IEP (calculated)

5.614

GRAVY (calculated)

0.197

Length

87 amino acids

Sequence
(BLAST)

1: MVFSSWMHFC AVRIFAESIL RYGLPPSFLS VVLAPSIKSE KKVRSILESL CDSSNSNFWK ADDEGGMAGF GGDTEAHPYV SFTINLV

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.