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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS4A01G376700.1
TraesCS6A01G017500.2
TraesCS6A01G326200.1
TraesCS6B01G024900.1
TraesCS6B01G356800.1
TraesCS6D01G020700.1
TraesCS6D01G306000.1
TraesCS7A01G078500.1
TraesCS7D01G073700.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12840.1 TraesCS4A01G376700.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS6A01G017500.2 AT1G77760.1 21798944
AT1G12840.1 TraesCS6A01G326200.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS6B01G024900.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS6B01G356800.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS6D01G020700.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS6D01G306000.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS7A01G078500.1 AT1G77760.1 21798944
AT1G12840.1 TraesCS7D01G073700.1 AT1G77760.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G281400.1 Wheat cytosol 94.96 94.96
TraesCS1A01G282100.1 Wheat cytosol 94.43 94.18
EES20054 Sorghum plastid 69.5 69.5
Zm00001d039157_P001 Maize plastid 68.44 68.44
TraesCS1B01G475400.3 Wheat golgi 68.97 68.42
Os05t0593100-01 Rice plasma membrane 67.9 67.9
Zm00001d044665_P001 Maize plastid 66.84 66.84
Solyc03g097800.2.1 Tomato nucleus 14.85 64.37
GSMUA_Achr4P08840_001 Banana cytosol 22.28 62.69
VIT_17s0000g00460.t01 Wine grape cytosol, plastid 62.33 62.67
VIT_14s0068g01280.t01 Wine grape mitochondrion 62.07 62.4
KXG22879 Sorghum plastid 68.17 62.38
CDY66539 Canola cytosol 59.42 59.57
CDY21070 Canola cytosol 59.42 59.57
AT1G12840.1 Thale cress cytosol 59.15 59.47
CDY19421 Canola cytosol 59.42 59.42
Bra016752.1-P Field mustard cytosol, mitochondrion, plastid 59.15 59.31
Bra019792.1-P Field mustard cytosol 58.89 59.2
CDX98037 Canola cytosol 58.89 59.2
GSMUA_AchrUn_... Banana cytosol 24.14 59.09
CDX71966 Canola cytosol 58.62 58.47
CDY16036 Canola cytosol 58.89 46.84
Bra026951.1-P Field mustard cytosol 58.89 39.02
CDY05652 Canola cytosol 8.22 36.47
CDY26596 Canola cytosol 58.89 36.16
KRH62549 Soybean mitochondrion 12.73 34.78
Protein Annotations
EnsemblPlants:TraesCS1B01G291300.1EnsemblPlantsGene:TraesCS1B01G291300Gene3D:1.20.1460.10Gene3D:3.30.70.100Gene3D:3.30.70.1180GO:GO:0003674
GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0015078GO:GO:0015991
GO:GO:0016020GO:GO:0033180InterPro:ATPase_V1-cplx_csuInterPro:Vac_ATP_synth_c_sfPANTHER:PTHR10137PANTHER:PTHR10137:SF0
PFAM:PF03223SEG:segSUPFAM:SSF118203TIGR:cd14785MapMan:24.1.1.2.3:
Description
No Description!
Coordinates
chr1B:-:508669009..508672506
Molecular Weight (calculated)
42449.4 Da
IEP (calculated)
4.910
GRAVY (calculated)
-0.199
Length
377 amino acids
Sequence
(BLAST)
001: MPTKYLIAAL PVQSAGGDIT AAENSLWRSL EDSISQHAID TPLYRFTVPA LKGGTLDSLL ALSDDLIRSN LFIEGASHRI RRQIEDLERD GGAGEGGALI
101: TVDGVPVDSY LSRFVWDERK YPTKWPLKDI IASILSRIAK IEDEIKVQSS KYNSCKNHLR TIYRKQSVSL VVRDLSNLVK PEDIITSEHL ATLLAVVPKY
201: SQNDWLSCYE SLDTFVVPRS SKRLYEDDEY ALYTVTLFAK VVGNFKAHAQ EKGFLIRDFV YSPEAQESKD DLEKLLQDEE TMRTSLLELL YARYSEVFSS
301: WMHICAVFVF AESILRYGLS PSILCVVLAP STESEKKVRN ILEEHCGNAN SNDFWKSDDD GLGGEIHPYI SSTMNVV
Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)
001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA
Arabidopsis Description
VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.