CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68044
CDX79234
CDX87505
CDX88386
CDY26836
CDY68886

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	CDX68044	AT1G77760.1	21798944
AT1G12840.1	CDX79234	AT1G77760.1	21798944
AT1G12840.1	CDX87505	AT1G77760.1	21798944
AT1G12840.1	CDX88386	AT1G77760.1	21798944
AT1G12840.1	CDY26836	AT1G77760.1	21798944
AT1G12840.1	CDY68886	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71966	Canola	cytosol	78.69	98.68
CDX98037	Canola	cytosol	76.79	97.07
CDY19421	Canola	cytosol	76.58	96.29
CDY21070	Canola	cytosol	76.37	96.28
CDY66539	Canola	cytosol	76.37	96.28
AT1G12840.1	Thale cress	cytosol	76.16	96.27
VIT_14s0068g01280.t01	Wine grape	mitochondrion	64.77	81.87
KRG94673	Soybean	endoplasmic reticulum	64.98	81.7
KRH08399	Soybean	endoplasmic reticulum	63.71	80.53
KRH70055	Soybean	endoplasmic reticulum	63.5	80.27
KRH06855	Soybean	endoplasmic reticulum	63.92	78.91
Solyc03g097790.2.1	Tomato	plastid	49.79	77.89
GSMUA_Achr4P08830_001	Banana	mitochondrion, plastid	41.35	76.86
EES20054	Sorghum	plastid	60.55	76.13
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	41.35	75.97
Os05t0593100-01	Rice	plasma membrane	60.34	75.86
Zm00001d044665_P001	Maize	plastid	59.49	74.8
Zm00001d039157_P001	Maize	plastid	59.49	74.8
CDY26596	Canola	cytosol	96.2	74.27
TraesCS1A01G440200.1	Wheat	cytosol	57.38	71.58
TraesCS1B01G475400.3	Wheat	golgi	57.38	71.58
TraesCS1D01G449200.3	Wheat	cytosol	57.17	71.32
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	57.81	69.54
KXG22879	Sorghum	plastid	59.7	68.69
TraesCS1B01G291300.1	Wheat	cytosol	46.84	58.89
TraesCS1D01G281400.1	Wheat	cytosol	46.62	58.62
TraesCS1A01G282100.1	Wheat	cytosol	46.62	58.47
CDY05652	Canola	cytosol	9.49	52.94
TraesCS7A01G285700.1	Wheat	cytosol	14.56	47.59
TraesCS5A01G063700.1	Wheat	cytosol	24.26	47.52
Zm00001d012311_P001	Maize	plastid	11.81	27.86

Protein Annotations

Gene3D:1.20.1460.10	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	GO:A0A078FSI1	UniProt:A0A078FSI1
InterPro:ATPase_V1-cplx_csu	EnsemblPlants:CDY16036	ProteinID:CDY16036	ProteinID:CDY16036.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015078
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0033180	EnsemblPlantsGene:GSBRNA2T00090428001	PFAM:PF03223
PANTHER:PTHR10137	PANTHER:PTHR10137:SF0	SUPFAM:SSF118203	UniParc:UPI0004EEC438	InterPro:Vac_ATP_synth_c_sf	SEG:seg

Description

BnaC08g40870DV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A078FSI1]

Coordinates

chrLK032060:+:266469..269956

Molecular Weight (calculated)

54183.2 Da

IEP (calculated)

4.903

GRAVY (calculated)

-0.376

Length

474 amino acids

Sequence
(BLAST)

001: MTSRYWVVSL PVKDSSSTLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVENIQSQVA KIEDDLKVRV AEYNNVRGQL NAINRKQSGS LAVRDLSSLV KPEDIVASEH LETLLAVVPK YSQKDWLACY
201: ETLTDFVVPR SSKKLFEDNE YALYTVTLFT RVADNFRTNA REKGFQVRDF EHSVEAQETR KQELEKLVQD QENLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: IFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLANCDDY RDLDIRSDPA LLTEKQWSCP
401: DPQCGKIYDG EQMENRLVQI VRQSEKMYQI QDLLCNQVKA AHLTEQCECA GSFRCKESGS DFLKRMEVFL DIIS

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.