Factsheet for TraesCS1B01G475400.3

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22160430
golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G376700.1
TraesCS6A01G017500.2
TraesCS6A01G326200.1
TraesCS6B01G024900.1
TraesCS6B01G356800.1
TraesCS6D01G020700.1
TraesCS6D01G306000.1
TraesCS7A01G078500.1
TraesCS7D01G073700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	TraesCS4A01G376700.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6A01G017500.2	AT1G77760.1	21798944
AT1G12840.1	TraesCS6A01G326200.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6B01G024900.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6B01G356800.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6D01G020700.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS6D01G306000.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS7A01G078500.1	AT1G77760.1	21798944
AT1G12840.1	TraesCS7D01G073700.1	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G449200.3	Wheat	cytosol	99.47	99.47
TraesCS1A01G440200.1	Wheat	cytosol	99.47	99.47
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	98.68	95.18
EES20054	Sorghum	plastid	86.05	86.74
Zm00001d039157_P001	Maize	plastid	84.74	85.41
Os05t0593100-01	Rice	plasma membrane	84.74	85.41
Zm00001d044665_P001	Maize	plastid	83.95	84.62
KXG22879	Sorghum	plastid	84.74	78.16
GSMUA_Achr4P08840_001	Banana	cytosol	27.37	77.61
VIT_17s0000g00460.t01	Wine grape	cytosol, plastid	75.26	76.27
VIT_14s0068g01280.t01	Wine grape	mitochondrion	73.16	74.13
CDY21070	Canola	cytosol	72.37	73.14
CDY66539	Canola	cytosol	72.37	73.14
Bra019792.1-P	Field mustard	cytosol	72.11	73.07
CDX98037	Canola	cytosol	72.11	73.07
CDY19421	Canola	cytosol	72.37	72.94
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	72.11	72.87
AT1G12840.1	Thale cress	cytosol	71.32	72.27
GSMUA_AchrUn_...	Banana	cytosol	29.21	72.08
CDX71966	Canola	cytosol	71.58	71.96
Solyc03g097800.2.1	Tomato	nucleus	16.05	70.11
TraesCS1B01G291300.1	Wheat	cytosol	68.42	68.97
CDY16036	Canola	cytosol	71.58	57.38
Bra026951.1-P	Field mustard	cytosol	71.84	47.98
CDY26596	Canola	cytosol	71.84	44.46
CDY05652	Canola	cytosol	9.74	43.53
KRH62549	Soybean	mitochondrion	15.26	42.03

Protein Annotations

EnsemblPlants:TraesCS1B01G475400.3	EnsemblPlantsGene:TraesCS1B01G475400	Gene3D:1.20.1460.10	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015078	GO:GO:0015991
GO:GO:0016020	GO:GO:0033180	InterPro:ATPase_V1-cplx_csu	InterPro:Vac_ATP_synth_c_sf	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0
PFAM:PF03223	SEG:seg	SUPFAM:SSF118203	TIGR:cd14785	MapMan:24.1.1.2.3	:

Description

No Description!

Coordinates

chr1B:+:683572580..683576696

Molecular Weight (calculated)

42806.8 Da

IEP (calculated)

5.518

GRAVY (calculated)

-0.245

Length

380 amino acids

Sequence
(BLAST)

001: MATRYWIAAL PVADDNVAAG KTALWARLQD AISRHSFDTP LYRFTVPDLR PGTLDSLLAL SDDLVKSNIF IEGVSHKIRR QIEDLERAGG VEPGTLTVDG
101: VPVDSYLTRF VWDEGKYPVN APLKETVASI QSQVAKIEDD MKVRVAEYGN VKSQLGAINR KQTGSLAVRD LSNLIKPEDM VTSEHLVTLL SIVPKYSQKD
201: WLSSYESLDT FVVPRSSKKL YEDNEYALYT VTLFAKVVDN FKVHAREKGF QIRDFEYSPE AQESRKQELE KLLQDQEVMR TSLLQWCYAS YSEVFSSWMH
301: FSAVRVFVES ILRYGLPARF LSVVLAPSTK SEKKVRNILE GLCGNANSSY WRSEDDVGMA AGLGGEAESH PYVSFTINFV

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.