Factsheet for Zm00001d039157_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017025_P001
Zm00001d018206_P001
Zm00001d031769_P001
Zm00001d049995_P001
Zm00001d052139_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	Zm00001d017025_P001	AT1G77760.1	21798944
AT1G12840.1	Zm00001d018206_P001	AT1G77760.1	21798944
AT1G12840.1	Zm00001d031769_P001	AT1G77760.1	21798944
AT1G12840.1	Zm00001d049995_P001	AT1G77760.1	21798944
AT1G12840.1	Zm00001d052139_P001	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES20054	Sorghum	plastid	97.88	97.88
Zm00001d044665_P001	Maize	plastid	92.04	92.04
Os05t0593100-01	Rice	plasma membrane	91.78	91.78
TraesCS1A01G440200.1	Wheat	cytosol	85.68	85.0
TraesCS1D01G449200.3	Wheat	cytosol	85.41	84.74
TraesCS1B01G475400.3	Wheat	golgi	85.41	84.74
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	84.62	80.96
VIT_17s0000g00460.t01	Wine grape	cytosol, plastid	79.58	80.0
VIT_14s0068g01280.t01	Wine grape	mitochondrion	78.51	78.93
CDY21070	Canola	cytosol	75.6	75.8
CDY66539	Canola	cytosol	75.6	75.8
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	75.33	75.53
Bra019792.1-P	Field mustard	cytosol	75.07	75.47
CDX98037	Canola	cytosol	75.07	75.47
AT1G12840.1	Thale cress	cytosol	74.8	75.2
CDY19421	Canola	cytosol	75.07	75.07
GSMUA_Achr4P08840_001	Banana	cytosol	26.53	74.63
CDX71966	Canola	cytosol	74.54	74.34
Solyc03g097800.2.1	Tomato	nucleus	16.98	73.56
TraesCS1D01G281400.1	Wheat	cytosol	69.23	69.23
TraesCS1A01G282100.1	Wheat	cytosol	69.23	69.05
GSMUA_AchrUn_...	Banana	cytosol	28.12	68.83
TraesCS1B01G291300.1	Wheat	cytosol	68.44	68.44
CDY16036	Canola	cytosol	74.8	59.49
Bra026951.1-P	Field mustard	cytosol	74.8	49.56
KRH62549	Soybean	mitochondrion	16.98	46.38
CDY26596	Canola	cytosol	74.8	45.93
CDY05652	Canola	cytosol	10.08	44.71
Zm00001d012311_P001	Maize	plastid	17.51	32.84

Protein Annotations

Gene3D:1.20.1460.10	EntrezGene:100281241	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	ProteinID:AQK88861.1
ProteinID:AQK88865.1	InterPro:ATPase_V1-cplx_csu	UniProt:B4FMY6	EMBL:BT038474	EMBL:EU956058	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015078
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0033180	PFAM:PF03223	PANTHER:PTHR10137
PANTHER:PTHR10137:SF0	SUPFAM:SSF118203	UniParc:UPI00017B6D62	InterPro:Vac_ATP_synth_c_sf	EnsemblPlantsGene:Zm00001d039157	EnsemblPlants:Zm00001d039157_P001
EnsemblPlants:Zm00001d039157_T001	SEG:seg	:	:	:	:

Description

V-type proton ATPase subunit C

Coordinates

chr6:-:171239022..171243031

Molecular Weight (calculated)

42709.7 Da

IEP (calculated)

5.330

GRAVY (calculated)

-0.241

Length

377 amino acids

Sequence
(BLAST)

001: MATRYWIVSL PVQSPGAIAS SLWSRLQDSI SRHSFDTPLY RFNVPDLRVG TLDSLLALSD DLVKSNVFVE GVSHKIRRQI EDLERAGGVE SGTLTVDGVP
101: VDTYLTRFVW DEGKYPTMSP LKEIVGSIQS QVAKIEDDMK VRAAEYNNVR SQLSAINRKQ SGSLAVRDLS NLVKPEDMIT SEHLVTLLAI VPKYSQKDWL
201: SSYETLDTFV VPRSSKKLYE DNEYALYTVT LFAKVVDNFK VRAREKGFQI RDFEYSPEAQ ESRMQEMEKL LRDQEAMRTT LLQWCYASYS EVFSSWMHFC
301: AVRVFVESIL RYGLPPSFLS AVLAPSTKSE KKVRSILDEL SGDAHSLYWK SEDDVGVAGL GGETEAHPYV SFTINFV

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.