CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
plasma membrane 1
cytosol 2
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES07601
EES13985
OQU85223

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12840.1	EES07601	AT1G77760.1	21798944
AT1G12840.1	EES13985	AT1G77760.1	21798944
AT1G12840.1	OQU85223	AT1G77760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039157_P001	Maize	plastid	97.88	97.88
Os05t0593100-01	Rice	plasma membrane	93.37	93.37
TraesCS1A01G440200.1	Wheat	cytosol	87.0	86.32
KXG22879	Sorghum	plastid	94.16	86.17
TraesCS1D01G449200.3	Wheat	cytosol	86.74	86.05
TraesCS1B01G475400.3	Wheat	golgi	86.74	86.05
HORVU1Hr1G094800.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	85.94	82.23
VIT_17s0000g00460.t01	Wine grape	cytosol, plastid	79.58	80.0
VIT_14s0068g01280.t01	Wine grape	mitochondrion	78.78	79.2
GSMUA_Achr4P08840_001	Banana	cytosol	27.59	77.61
CDY21070	Canola	cytosol	76.66	76.86
CDY66539	Canola	cytosol	76.39	76.6
AT1G12840.1	Thale cress	cytosol	76.13	76.53
Bra016752.1-P	Field mustard	cytosol, mitochondrion, plastid	76.13	76.33
CDX98037	Canola	cytosol	75.86	76.27
Bra019792.1-P	Field mustard	cytosol	75.86	76.27
Solyc03g097800.2.1	Tomato	nucleus	17.51	75.86
CDY19421	Canola	cytosol	75.86	75.86
CDX71966	Canola	cytosol	75.86	75.66
GSMUA_AchrUn_...	Banana	cytosol	29.18	71.43
TraesCS1D01G281400.1	Wheat	cytosol	70.29	70.29
TraesCS1A01G282100.1	Wheat	cytosol	70.29	70.11
TraesCS1B01G291300.1	Wheat	cytosol	69.5	69.5
CDY16036	Canola	cytosol	76.13	60.55
Bra026951.1-P	Field mustard	cytosol	76.13	50.44
CDY26596	Canola	cytosol	76.13	46.74
KRH62549	Soybean	mitochondrion	16.98	46.38
CDY05652	Canola	cytosol	10.08	44.71

Protein Annotations

Gene3D:1.20.1460.10	MapMan:24.1.1.2.3	Gene3D:3.30.70.100	Gene3D:3.30.70.1180	EntrezGene:8065321	InterPro:ATPase_V1-cplx_csu
UniProt:C5YX05	EnsemblPlants:EES20054	ProteinID:EES20054	ProteinID:EES20054.1	GO:GO:0000221	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008553	GO:GO:0015078
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0033180	GO:GO:0046961
PFAM:PF03223	PANTHER:PTHR10137	PANTHER:PTHR10137:SF0	EnsemblPlantsGene:SORBI_3009G256000	SUPFAM:SSF118203	unigene:Sbi.2273
UniParc:UPI0001A89433	InterPro:Vac_ATP_synth_c_sf	RefSeq:XP_002441624.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:58974592..58978534

Molecular Weight (calculated)

42695.7 Da

IEP (calculated)

5.516

GRAVY (calculated)

-0.259

Length

377 amino acids

Sequence
(BLAST)

001: MATRYWIVSL PVQSPGATAS SLWSRLQDSI SRHSFDTPLY RFNVPDLRVG TLDSLLALSD DLVKSNVFVE GVSHKIRRQI EDLERAGGVE SGTLTVDGVP
101: VDTYLTRFVW DEGKYPTMSP LKEIVGSIQS QVAKIEDDMK VRAAEYNNVR SQLSAINRKQ SGSLAVRDLS NLVKPEDMIT SEHLVTLLAI VPKYSQKDWL
201: SSYETLDTFV VPRSSKKLYE DNEYALYTVT LFAKVVDNFK VRAREKGFQV RDFEYSPEAQ ESRKQEMEKL LQDQEAMRTT LLQWCYASYS EVFSSWMHFC
301: AVRVFVESIL RYGLPPSFLS AVLAPSTKSE KKVRSILEEL CGNAHSLYWK SEDDVGIAGL GGETEAHPYV SFTINFV

Best Arabidopsis Sequence Match ( AT1G12840.1 )
(BLAST)

001: MTSRYWVVSL PVKDSASSLW NRLQEQISKH SFDTPVYRFN IPNLRVGTLD SLLALGDDLL KSNSFVEGVS QKIRRQIEEL ERISGVESNA LTVDGVPVDS
101: YLTRFVWDEA KYPTMSPLKE VVDNIQSQVA KIEDDLKVRV AEYNNIRGQL NAINRKQSGS LAVRDLSNLV KPEDIVESEH LVTLLAVVPK YSQKDWLACY
201: ETLTDYVVPR SSKKLFEDNE YALYTVTLFT RVADNFRIAA REKGFQVRDF EQSVEAQETR KQELAKLVQD QESLRSSLLQ WCYTSYGEVF SSWMHFCAVR
301: TFAESIMRYG LPPAFLACVL SPAVKSEKKV RSILERLCDS TNSLYWKSEE DAGAMAGLAG DSETHPYVSF TINLA

Arabidopsis Description

VHA-CV-type proton ATPase subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178WM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.